RetrogeneDB ID: | retro_rnor_893 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 12:32584912..32585268(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rps25 | ||
Ensembl ID: | ENSRNOG00000027503 | ||
Aliases: | None | ||
Description: | 40S ribosomal protein S25 [Source:UniProtKB/Swiss-Prot;Acc:P62853] |
Percent Identity: | 78.57 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MPPKDDKKKKDAGKSAKKDKDPVNKSGGKAKKKKWSKGKVRDKLNNLVLFDKATYDKLCK-EVPNYKLIT |
MPPKDDKKKKDAGKSAKKDK.PVNKSGGKAK.KKWSKGKV.DK.NNLVLFDKAT..KLC...VP.....T | |
Retrocopy | MPPKDDKKKKDAGKSAKKDKHPVNKSGGKAKEKKWSKGKVQDKPNNLVLFDKATSGKLCR<DVP---IMT |
Parental | PAVVSERLKIRGSLARAALQELLSKGLIKLVSKHRAQVIYTRNTKGGDAPAAGEDA |
PAVVS.RL.I.GS..RAALQELL.KGL.KL.SKHRAQ.I....TKGGDAPAAGEDA | |
Retrocopy | PAVVSRRLEI*GSVTRAALQELLRKGLMKLLSKHRAQGI---DTKGGDAPAAGEDA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 48 .24 RPM |
SRP017611_kidney | 0 .00 RPM | 72 .64 RPM |
SRP017611_liver | 0 .00 RPM | 44 .58 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000027772 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000013691 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000007880 | 7 retrocopies | |
Latimeria chalumnae | ENSLACG00000017531 | 4 retrocopies | |
Macropus eugenii | ENSMEUG00000014185 | 3 retrocopies | |
Mus musculus | ENSMUSG00000009927 | 15 retrocopies | |
Otolemur garnettii | ENSOGAG00000007265 | 3 retrocopies | |
Ochotona princeps | ENSOPRG00000016194 | 9 retrocopies | |
Rattus norvegicus | ENSRNOG00000027503 | 5 retrocopies | |
Vicugna pacos | ENSVPAG00000000266 | 4 retrocopies |