RetrogeneDB ID: | retro_mmus_1760 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 18:30419685..30420060(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rps25 | ||
Ensembl ID: | ENSMUSG00000009927 | ||
Aliases: | Rps25, 2810009D21Rik | ||
Description: | ribosomal protein S25 [Source:MGI Symbol;Acc:MGI:1922867] |
Percent Identity: | 99.2 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MPPKDDKKKKDAGKSAKKDKDPVNKSGGKAKKKKWSKGKVRDKLNNLVLFDKATYDKLCKEVPNYKLITP |
MPPKDDKKKKDAGKSAKKDKDPVNKSGGKAKKKKWSKGKVRDKLNNLVLFDKAT.DKLCKEVPNYKLITP | |
Retrocopy | MPPKDDKKKKDAGKSAKKDKDPVNKSGGKAKKKKWSKGKVRDKLNNLVLFDKAT*DKLCKEVPNYKLITP |
Parental | AVVSERLKIRGSLARAALQELLSKGLIKLVSKHRAQVIYTRNTKGGDAPAAGEDA |
AVVSERLKIRGSLARAALQELLSKGLIKLVSKHRAQVIYTRNTKGGDAPAAGEDA | |
Retrocopy | AVVSERLKIRGSLARAALQELLSKGLIKLVSKHRAQVIYTRNTKGGDAPAAGEDA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 51 .91 RPM |
SRP007412_cerebellum | 0 .00 RPM | 34 .65 RPM |
SRP007412_heart | 0 .06 RPM | 53 .73 RPM |
SRP007412_kidney | 0 .02 RPM | 63 .54 RPM |
SRP007412_liver | 0 .00 RPM | 64 .01 RPM |
SRP007412_testis | 0 .00 RPM | 52 .01 RPM |
TSS No. | TSS Name | TSS expression level (Expr) in TPM range: | ||||
---|---|---|---|---|---|---|
no expression | 0 < Expr ≤ 1 | 1 < Expr ≤ 5 | 5 < Expr ≤ 10 | Expr > 10 | ||
TSS #1 | TSS_58337 | 278 libraries | 587 libraries | 200 libraries | 5 libraries | 2 libraries |