RetrogeneDB ID: | retro_btau_203 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 3:16507483..16507861(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSBTAG00000018987 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS25 | ||
Ensembl ID: | ENSBTAG00000027772 | ||
Aliases: | None | ||
Description: | 40S ribosomal protein S25 [Source:UniProtKB/Swiss-Prot;Acc:Q56JX5] |
Percent Identity: | 100. % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MPPKDDKKKKDAGKSAKKDKDPVNKSGGKAKKKKWSKGKVRDKLNNLVLFDKATYDKLCKEVPNYKLITP |
MPPKDDKKKKDAGKSAKKDKDPVNKSGGKAKKKKWSKGKVRDKLNNLVLFDKATYDKLCKEVPNYKLITP | |
Retrocopy | MPPKDDKKKKDAGKSAKKDKDPVNKSGGKAKKKKWSKGKVRDKLNNLVLFDKATYDKLCKEVPNYKLITP |
Parental | AVVSERLKIRGSLARAALQELLSKGLIKLVSKHRAQVIYTRNTKGGDAPAAGEDA |
AVVSERLKIRGSLARAALQELLSKGLIKLVSKHRAQVIYTRNTKGGDAPAAGEDA | |
Retrocopy | AVVSERLKIRGSLARAALQELLSKGLIKLVSKHRAQVIYTRNTKGGDAPAAGEDA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 7 .57 RPM | 181 .90 RPM |
ERP005899_muscle | 2 .16 RPM | 515 .17 RPM |
SRP017611_brain | 0 .87 RPM | 65 .28 RPM |
SRP017611_kidney | 0 .89 RPM | 174 .61 RPM |
SRP017611_liver | 1 .06 RPM | 137 .27 RPM |
SRP030211_testis | 1 .09 RPM | 125 .09 RPM |