RetrogeneDB ID:

retro_ogar_257

Retrocopy
location
Organism:Bushbaby (Otolemur garnettii)
Coordinates:GL873619.1:5022753..5023131(-)
Located in intron of:ENSOGAG00000003229
Retrocopy
information
Ensembl ID:ENSOGAG00000027758
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSOGAG00000007265
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ogar_257
ATGCCGCCCAAGGACGACAAGAAGAAGAAAGACGCCAGAAAGTCGGCCAAGAAAGACAAAGACCCAGTGAACAAATCTGG
AGGCAAGGCCAAAAAGAAGAAGTGGTCCAAGGGCAAAGTTCAGGACAAGCTCAACAACCTAGTCTTGTTTGACAAAGCTA
CATATGACAAACTCTGTAAGGAAGTTCCCAACTATAAGCCTATCACTCCAGCTGTGGTCTCTGAGAGACTGAAGATTCGA
GGTTCCCTGGCCAGGGCAGCCCTTCAAGAGCTCCTTAGTAAAGGACTTATCAAACTGGTTTCTAAGCACAGAGCTCAAGT
AATTTATACCAGAAATACCAAGGGTGGAGATGCCCCAGCTGCTGGTGAAGATGCATGA

ORF - retro_ogar_257 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 97.6 %
Parental protein coverage: 100. %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMPPKDDKKKKDAGKSAKKDKDPVNKSGGKAKKKKWSKGKVRDKLNNLVLFDKATYDKLCKEVPNYKLITP
MPPKDDKKKKDA.KSAKKDKDPVNKSGGKAKKKKWSKGKV.DKLNNLVLFDKATYDKLCKEVPNYK.ITP
RetrocopyMPPKDDKKKKDARKSAKKDKDPVNKSGGKAKKKKWSKGKVQDKLNNLVLFDKATYDKLCKEVPNYKPITP
ParentalAVVSERLKIRGSLARAALQELLSKGLIKLVSKHRAQVIYTRNTKGGDAPAAGEDA
AVVSERLKIRGSLARAALQELLSKGLIKLVSKHRAQVIYTRNTKGGDAPAAGEDA
RetrocopyAVVSERLKIRGSLARAALQELLSKGLIKLVSKHRAQVIYTRNTKGGDAPAAGEDA

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Otolemur garnettii was not studied using RNA-Seq expression data.
Otolemur garnettii was not studied using ChIP-Seq data.
Otolemur garnettii was not studied using EST data.
Otolemur garnettii was not studied using FANTOM5 data.
retro_ogar_257 was not experimentally validated.

Retrocopy orthology:
Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 21 parental genes, and 145 retrocopies.

Species Parental gene accession Retrocopies number
Bos taurus ENSBTAG000000277722 retrocopies
Callithrix jacchus ENSCJAG000000136911 retrocopy
Dasypus novemcinctus ENSDNOG000000078807 retrocopies
Equus caballus ENSECAG000000209782 retrocopies
Erinaceus europaeus ENSEEUG000000146306 retrocopies
Homo sapiens ENSG000001181813 retrocopies
Gorilla gorilla ENSGGOG000000255407 retrocopies
Latimeria chalumnae ENSLACG000000175314 retrocopies
Macropus eugenii ENSMEUG000000141853 retrocopies
Mus musculus ENSMUSG0000000992715 retrocopies
Oryctolagus cuniculus ENSOCUG0000001725611 retrocopies
Otolemur garnettii ENSOGAG00000007265 3 retrocopies
retro_ogar_220, retro_ogar_257 , retro_ogar_32,
Ochotona princeps ENSOPRG000000161949 retrocopies
Pongo abelii ENSPPYG000000259156 retrocopies
Pan troglodytes ENSPTRG0000000436110 retrocopies
Pteropus vampyrus ENSPVAG0000001249212 retrocopies
Rattus norvegicus ENSRNOG000000275035 retrocopies
Sorex araneus ENSSARG000000022844 retrocopies
Tupaia belangeri ENSTBEG0000001024416 retrocopies
Tarsius syrichta ENSTSYG0000000542215 retrocopies
Vicugna pacos ENSVPAG000000002664 retrocopies



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