RetrogeneDB ID: | retro_mmus_2641 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 5:30240078..30240448(-) | ||
Located in intron of: | ENSMUSG00000075703 | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000085099 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rps25 | ||
Ensembl ID: | ENSMUSG00000009927 | ||
Aliases: | Rps25, 2810009D21Rik | ||
Description: | ribosomal protein S25 [Source:MGI Symbol;Acc:MGI:1922867] |
Percent Identity: | 91.34 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | MPPKDDKKKKDAGKSAKKDKDPVNKSGGKAKKKKWSKGKVRDKL-NNLVLFDKATYDKLCKEVPNYKLIT |
MPPKDDKKK.DAGKS.KKDKDPVNKSGGKAKKK.WSKGKVR.KL..NLVLFDKATYDKLCKEVPNYKLIT | |
Retrocopy | MPPKDDKKKEDAGKSVKKDKDPVNKSGGKAKKK-WSKGKVRYKL<DNLVLFDKATYDKLCKEVPNYKLIT |
Parental | PAVVSERLKIRGSLARAALQELLSKGLIKLVSKHRAQVIYTRNTKGGDAPA-AGEDA |
PAVVSERLKIRGSLARAALQELLSKGLIKLVSKHRA.VIY.RNTK.GDAPA..GEDA | |
Retrocopy | PAVVSERLKIRGSLARAALQELLSKGLIKLVSKHRAHVIYPRNTKSGDAPA<CGEDA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 51 .91 RPM |
SRP007412_cerebellum | 0 .04 RPM | 34 .65 RPM |
SRP007412_heart | 0 .00 RPM | 53 .73 RPM |
SRP007412_kidney | 0 .04 RPM | 63 .54 RPM |
SRP007412_liver | 0 .00 RPM | 64 .01 RPM |
SRP007412_testis | 0 .23 RPM | 52 .01 RPM |