Parental gene:

RPS25, ENSCJAG00000013691

Aliases:None
Description:40S ribosomal protein S25 [Source:RefSeq peptide;Acc:NP_001240703]
Organism:Marmoset (Callithrix jacchus)
Coordinates:11:16656525..16659961(-)


>ENSCJAG00000013691
ATGCCGCCCAAGGACGACAAGAAGAAGAAAGACGCTGGAAAGTCGGCCAAGAAAGACAAAGACCCAGTGAACAAATCCGG
GGGCAAGGCCAAAAAGAAGAAGTGGTCCAAAGGCAAAGTTCGGGACAAGCTCAATAACTTGGTCTTGTTTGACAAAGCTA
CCTATGACAAACTCTGTAAGGAAGTTCCCAACTATAAACTTATAACTCCAGCTGTGGTCTCTGAGAGACTGAAGATTCGA
GGCTCCCTTGCCAGGGCAGCCCTTCAGGAGCTCCTTAGCAAAGGACTTATCAAACTGGTTTCAAAGCACAGAGCTCAAGT
AATTTACACCAGAAATACCAAGGGTGGAGATGCTCCAGCTGCTGGTGAAGACGCATGA

Library Parental gene expression (RPM)
SRP051959_spleen 125 .38 RPM
SRP051959_skeletal_muscle 144 .13 RPM
SRP051959_lymph_node 124 .01 RPM
SRP051959_lung 94 .38 RPM
SRP051959_liver 116 .01 RPM
SRP051959_kidney 88 .83 RPM
SRP051959_heart 98 .52 RPM
SRP051959_colon 57 .84 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000027772 possible_ortholog 2 retrogenes
retro_btau_203, retro_btau_9,
Dasypus novemcinctus ENSDNOG00000007880 ortholog_one2many 7 retrogenes
retro_dnov_1092, retro_dnov_1566, retro_dnov_2219, retro_dnov_2593, retro_dnov_346, retro_dnov_877, retro_dnov_973,
Equus caballus ENSECAG00000020978 possible_ortholog 2 retrogenes
retro_ecab_89, retro_ecab_976,
Erinaceus europaeus ENSEEUG00000014630 possible_ortholog 6 retrogenes
retro_eeur_250, retro_eeur_281, retro_eeur_353, retro_eeur_424, retro_eeur_519, retro_eeur_675,
Homo sapiens ENSG00000118181 ortholog_one2many 3 retrogenes
retro_hsap_3371, retro_hsap_3547, retro_hsap_4310,
Gorilla gorilla ENSGGOG00000025540 ortholog_one2many 7 retrogenes
retro_ggor_1601, retro_ggor_1666, retro_ggor_1979, retro_ggor_2395, retro_ggor_2880, retro_ggor_337, retro_ggor_634,
Latimeria chalumnae ENSLACG00000017531 possible_ortholog 4 retrogenes
retro_lcha_101, retro_lcha_118, retro_lcha_50, retro_lcha_72,
Macropus eugenii ENSMEUG00000014185 possible_ortholog 3 retrogenes
retro_meug_1181, retro_meug_1562, retro_meug_174,
Mus musculus ENSMUSG00000009927 possible_ortholog 15 retrogenes
retro_mmus_128, retro_mmus_1368, retro_mmus_1455, retro_mmus_1760, retro_mmus_1769, retro_mmus_1788, retro_mmus_2375, retro_mmus_2393, retro_mmus_2641, retro_mmus_2700, retro_mmus_2797, retro_mmus_3218, retro_mmus_336, retro_mmus_3523, retro_mmus_880,
Oryctolagus cuniculus ENSOCUG00000017256 ortholog_one2many 11 retrogenes
retro_ocun_1166, retro_ocun_1231, retro_ocun_1319, retro_ocun_1553, retro_ocun_1761, retro_ocun_291, retro_ocun_298, retro_ocun_548, retro_ocun_623, retro_ocun_856, retro_ocun_978,
Otolemur garnettii ENSOGAG00000007265 possible_ortholog 3 retrogenes
retro_ogar_220, retro_ogar_257, retro_ogar_32,
Ochotona princeps ENSOPRG00000016194 possible_ortholog 9 retrogenes
retro_opri_1099, retro_opri_1204, retro_opri_256, retro_opri_320, retro_opri_393, retro_opri_493, retro_opri_64, retro_opri_854, retro_opri_873,
Pongo abelii ENSPPYG00000025915 ortholog_one2many 6 retrogenes
retro_pabe_1889, retro_pabe_1971, retro_pabe_2930, retro_pabe_3507, retro_pabe_71, retro_pabe_94,
Pan troglodytes ENSPTRG00000004361 possible_ortholog 10 retrogenes
retro_ptro_1368, retro_ptro_1494, retro_ptro_1579, retro_ptro_1722, retro_ptro_1935, retro_ptro_2291, retro_ptro_2411, retro_ptro_245, retro_ptro_2918, retro_ptro_536,
Pteropus vampyrus ENSPVAG00000012492 possible_ortholog 12 retrogenes
retro_pvam_1066, retro_pvam_1176, retro_pvam_1202, retro_pvam_1287, retro_pvam_130, retro_pvam_1418, retro_pvam_1448, retro_pvam_247, retro_pvam_277, retro_pvam_426, retro_pvam_653, retro_pvam_668,
Rattus norvegicus ENSRNOG00000027503 possible_ortholog 5 retrogenes
retro_rnor_1430, retro_rnor_157, retro_rnor_893, retro_rnor_90, retro_rnor_992,
Sorex araneus ENSSARG00000002284 ortholog_one2many 4 retrogenes
retro_sara_21, retro_sara_212, retro_sara_43, retro_sara_542,
Tupaia belangeri ENSTBEG00000010244 ortholog_one2many 16 retrogenes
retro_tbel_1592, retro_tbel_1823, retro_tbel_1849, retro_tbel_22, retro_tbel_2651, retro_tbel_2744, retro_tbel_3106, retro_tbel_3107, retro_tbel_3499, retro_tbel_374, retro_tbel_3871, retro_tbel_3877, retro_tbel_4239, retro_tbel_4434, retro_tbel_444, retro_tbel_4464,
Tarsius syrichta ENSTSYG00000005422 ortholog_one2many 15 retrogenes
retro_tsyr_1050, retro_tsyr_1098, retro_tsyr_1125, retro_tsyr_1230, retro_tsyr_1252, retro_tsyr_1454, retro_tsyr_154, retro_tsyr_1558, retro_tsyr_2081, retro_tsyr_358, retro_tsyr_414, retro_tsyr_428, retro_tsyr_570, retro_tsyr_859, retro_tsyr_873,
Vicugna pacos ENSVPAG00000000266 possible_ortholog 4 retrogenes
retro_vpac_106, retro_vpac_118, retro_vpac_337, retro_vpac_546,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_208 100.00 100.00
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Download FASTA sequences of all ENSCJAG00000013691 retrocopies