Parental gene:

MSL3, ENSBTAG00000009278

Aliases:MSL3, MSL3L1
Description:male-specific lethal 3 homolog [Source:RefSeq peptide;Acc:NP_001179333]
Organism:Cow (Bos taurus)
Coordinates:X:142041441..142056938(-)


>ENSBTAG00000009278
ATGAGCGCGAGCGAGGGCATGAAATTTAAATTCCATTCAGGGGAGAAAGTGCTGTGCTTCGAGCCTGACCCCACCAAGGC
GCGAGTGCTGTACGATGCCAAGATCGTCGATGTTATTGTTGGGAAAGACGAAAAAGGCAGAAAGATCCCAGAATATCTGA
TCCATTTTAATGGTTGGAACAGAAGCTGGGATAGATGGGCAGCAGAGGATCATGTCCTTCGTGACACTGATGAAAATCGG
AGATTACAGCGGAAATTGGCCAAAAAAGCTGTAGCTCGCCTGAGAAGCACAGGAAGAAAGAGGAAGCGCTGCAGGTTGCC
TGGTGTGGACTCTGTCTTAAAAAGCCTCCCTGCTGACGAAAAAGATGAAAACGATGAAAACTCAATAAGCAGTTCCTCTG
ACAGTGAAGAAAAGGATGGAGAAATAAGTGAAGAGGGTGATACTGAAGAAAAGACTGAAGTGAAGGAAGGACCAGAGCTG
CACACAAAAAAGGAAATGGAAGAAAGAACAATAACTATAGAAATCCCTGACGTTCTGAAGAAGAAGCTTGAGGATGATTG
TTACTATATCAACAGGAGAAAACGGTTAGTGAAACTTCCATGCCAGACCAACATTATAACTATTTTGGAATCGTACGTGA
AGCATTTTGCTATCAATGCAGCCTTTTCAGCCAATGAGAGGCCTCGTCACCATCATGTTATACCACACGCCAACATGAAT
GTGCATTATATCCCAGCAGAAAAGAACGTTGACCTTTGTAAGGAGATGGTGGATGGATTAAGAATAACCTTTGATTACAC
TCTCCCATTGGTTTTGCTCTATCCATATGAACAAGTTCAGTATAAAAAGGTGACTTCGTCCAAATTTTTTCTTCCGATTA
AGGAAAGTACCACAAGCACTAATAGGAACCAGGAGGAGCTCTCTCCAAGCCCACCTTTGCTGAATCCATCCACACCACAG
TCCACAGAGAGTCAGCCAACCTCAGGTGAACCAACCACCCCCAAAAGGCGCAAAGGCGAGCCGGAAGCCTTTCAGTCTCT
GAGGCGGTCCACGCGCCACTCTGCCAACTGCGACAGGCTGTCTGAGAGCAGCGCCTCACCCCAGCCCAAGCGCCGGCAGC
AGGACACGTCTGCCAGCATGCCCAAGCTGTTCCTGCACCTGGAAAAGAAGACACCTGTTCATAGCAGATCATCCTCGCCT
GTTCCTCTGACCCCTAGCAAGGAAGGGAGTGCGGTGTTTGCTGGCTTTGAAGGCAGAAGAACTAATGAAATAAATGAGGT
CCTCTCTTGGAAACTTGTACCTGATAGTTATCCCCCAGGTGACCAACCACCTCCACCCTCTTACATTTATGGGGCACAAC
ACTTGCTGCGTTTGTTTGTGAAACTTCCAGAAATCCTTGGAAAGATGTCCTTTTCTGAGAAGAATCTGAAGGCTTTACTG
AAGCACTTTGATCTCTTTCTGAGGTTTTTAGCAGAGTACCATGATGACTTCTTCCCCGAGTCTGCCTATGTTGCTGCCTG
TGAGGCGCACTACAGCACGAAGAATCCCAGGGCAATTTATTAA

Library Parental gene expression (RPM)
SRP017611_brain 29 .46 RPM
SRP017611_kidney 49 .08 RPM
SRP017611_liver 26 .35 RPM
ERP005899_muscle 37 .01 RPM
ERP005899_liver 35 .98 RPM
SRP030211_testis 25 .12 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000001061 ortholog_one2many 1 retrogene
retro_cjac_1490,
Cavia porcellus ENSCPOG00000004692 ortholog_one2many 5 retrogenes
retro_cpor_1423, retro_cpor_1424, retro_cpor_1425, retro_cpor_1426, retro_cpor_95,
Homo sapiens ENSG00000005302 ortholog_one2one 2 retrogenes
retro_hsap_2401, retro_hsap_4097,
Gorilla gorilla ENSGGOG00000006582 ortholog_one2one 2 retrogenes
retro_ggor_1820, retro_ggor_2749,
Macaca mulatta ENSMMUG00000002689 ortholog_one2one 2 retrogenes
retro_mmul_2362, retro_mmul_972,
Monodelphis domestica ENSMODG00000017350 ortholog_one2one 1 retrogene
retro_mdom_1422,
Pongo abelii ENSPPYG00000020123 ortholog_one2one 2 retrogenes
retro_pabe_2166, retro_pabe_3353,
Pan troglodytes ENSPTRG00000021662 ortholog_one2one 2 retrogenes
retro_ptro_1751, retro_ptro_2778,
Pteropus vampyrus ENSPVAG00000005000 ortholog_one2one 1 retrogene
retro_pvam_203,
Sorex araneus ENSSARG00000008477 ortholog_one2one 1 retrogene
retro_sara_139,
Tarsius syrichta ENSTSYG00000012788 ortholog_one2one 4 retrogenes
retro_tsyr_1079, retro_tsyr_1649, retro_tsyr_1706, retro_tsyr_948,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_btau_883 88.06 97.69
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Download FASTA sequences of all ENSBTAG00000009278 retrocopies