RetrogeneDB ID: | retro_cpor_1423 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_80:3543209..3544049(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MSL3 | ||
Ensembl ID: | ENSCPOG00000004692 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 54.11 % |
Parental protein coverage: | 55.38 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 3 |
Parental | KLPCQTNIITILESYVKHFAINAAFSATERPRHHHAMVHANMNVHYIPAEKNVDLCKEMVDGLRITFDYT |
..P.Q....T.L.S..KHFAI.AA.SA..R..H..A...AN.N.H.IPAE.NV.L.KE.V.GLR.TFD.T | |
Retrocopy | RTPMQAHMLTLLQSCGKHFAIRAASSAKQRLQHTAA--GANVNMHFIPAENNVALSKEVVGGLRVTFDHT |
Parental | LPLVLLYPYEQAQYKKVTSSKFFLPIKESATSTNRSQEELSPSPPLLNPSTPQSTESQPTTGEPAT-PKR |
L...LL..YEQA.Y.KVTS...F..IK.SA..T..S.E..S..PPLL..ST.QS........EPA..PKR | |
Retrocopy | LAWLLLNLYEQAPYRKVTSIMPFVSIKQSAINTAKS*EGISLNPPLLSLSTLQSIDCD----EPAS<PKR |
Parental | RKAEPEALQSLRRSTRHSTNCDRLSESSASPQPKRRQQ-DTSTSMPKLFLHLEKKTPVHSRSSSPIPLTP |
.K..PEALQSLR....HST.C.RLS.SS..PQP......DTS...P.L..HLEK..PV.SRSSS..P.TP | |
Retrocopy | *KTKPEALQSLRWFPCHSTHCHRLS*SSTWPQPMCPHR<DTSANKPRLCKHLEKNMPVNSRSSSCMPVTP |
Parental | SKEGSGVFAGFEGRRTNEINEVLSWKLVPDNYP-PGDQPP-PPSYIYGAQHLLRLFVKLPEILGKMSFSE |
..EG...FA.F.GR...EI.EV....L.PDN...P....P.PPSYIYGAQ.L..LF.KLPEILGK.SF.E | |
Retrocopy | NEEGQAMFADFKGR--SEIEEVFF*HLLPDNFT<PPSDKPPPPSYIYGAQDLV*LFIKLPEILGKASFPE |
Parental | KNLKALLKHFDL |
...K..LKH..L | |
Retrocopy | NDPKGFLKHLNL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 12 .77 RPM |
SRP017611_kidney | 0 .00 RPM | 17 .38 RPM |
SRP017611_liver | 0 .00 RPM | 10 .75 RPM |
SRP040447_lung | 0 .00 RPM | 19 .22 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 22 .59 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000009278 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000001061 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000004692 | 5 retrocopies | |
Homo sapiens | ENSG00000005302 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000006582 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000002689 | 2 retrocopies | |
Monodelphis domestica | ENSMODG00000017350 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000020123 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000021662 | 2 retrocopies | |
Pteropus vampyrus | ENSPVAG00000005000 | 1 retrocopy | |
Sorex araneus | ENSSARG00000008477 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000012788 | 4 retrocopies |