RetrogeneDB ID: | retro_tsyr_948 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_25146:15897..16741(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MSL3 | ||
Ensembl ID: | ENSTSYG00000012788 | ||
Aliases: | None | ||
Description: | male-specific lethal 3 homolog (Drosophila) [Source:HGNC Symbol;Acc:7370] |
Percent Identity: | 66.2 % |
Parental protein coverage: | 58.11 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 4 |
Parental | EEPELQTKREMEERTITIEIPEVLKKQLEDDCYYI-NRRKRLVKLPCQTNIITILESYVKHFAINAAFSA |
.E.ELQT.REME.RTITI.IPEVLKKQLEDDCY...NRRK..V.LP.Q.N.ITILESY..HFA.NAAF.. | |
Retrocopy | KESELQTEREMEVRTITIGIPEVLKKQLEDDCYHL<NRRKQFV*LPFQPNVITILESYLRHFAMNAAFPV |
Parental | NERPRHHHAMAHANMNVHYIPAEKNVDLCKEMVDGLRITFDYTLPLVLLYPY-EQTQYKKVTSSKF-FLP |
.ERP...HA...A.......PAE.NVDLCK.M.DGLRITFDYTL...LLYP..EQ.QY.K.TSSKF.FLP | |
Retrocopy | RERPHLQHARPQADPKAPTGPAEENVDLCKKMADGLRITFDYTLRS-LLYPM<EQAQYEKMTSSKF<FLP |
Parental | IKESATNTSRSXXXXXXNSPLLNPSTPQSTESQPASGEPATPKRRKAEPEALQSLRRSTRHTTNCDRLSE |
.K..A.NT..S........PLLN..T...TE..PA.GE.ATP.R.KA.PEALQSLR.ST.H....DRLS. | |
Retrocopy | GKQRAPNTGGSQEALSPSWPLLNQPTTMTTEVPPATGELATPRRHKAHPEALQSLRQSTHHAAHGDRLSQ |
Parental | SSASPQPKRRQQDTSASMPKLFLHLEKKTPVHSRSSSPIPLTPSKEGSAVFAG-FEGRRTNEINEVLSWK |
SS.SP.P.R.QQD.S..MP.LFLHLEKK.PVHSRSS.P..LTPS.EG.AV.AG.F.GR.TNEI.EVLSWK | |
Retrocopy | SSVSPRPERGQQDLSTGMPTLFLHLEKKMPVHSRSSLPVLLTPSNEGRAVSAG>FGGRGTNEIKEVLSWK |
Parental | LVPDNYP |
LVPDNYP | |
Retrocopy | LVPDNYP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000009278 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000001061 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000004692 | 5 retrocopies | |
Homo sapiens | ENSG00000005302 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000006582 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000002689 | 2 retrocopies | |
Monodelphis domestica | ENSMODG00000017350 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000020123 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000021662 | 2 retrocopies | |
Pteropus vampyrus | ENSPVAG00000005000 | 1 retrocopy | |
Sorex araneus | ENSSARG00000008477 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000012788 | 4 retrocopies |