Parental gene:

MSL3, ENSG00000005302

Aliases:MSL3, MSL3L1
Description:male-specific lethal 3 homolog (Drosophila) [Source:HGNC Symbol;Acc:7370]
Organism:Human (Homo sapiens)
Coordinates:X:11776277..11793870(+)


>ENSG00000005302
ATGAGCGCGAGCGAGGGCATGAAATTTAAATTCCACTCAGGGGAGAAAGTGCTGTGCTTCGAGCCTGACCCCACCAAGGC
GCGAGTGCTGTACGATGCCAAGATTGTTGATGTTATTGTTGGGAAAGACGAAAAAGGCAGAAAGATCCCAGAATATCTGA
TCCATTTTAATGGTTGGAACAGAAGCTGGGATAGATGGGCAGCAGAAGATCATGTGCTTCGTGATACCGATGAAAATCGT
AGATTACAGCGTAAATTGGCAAGAAAAGCTGTAGCTCGCCTGAGGAGCACAGGAAGAAAGAAGAAGCGCTGCAGGTTGCC
TGGTGTGGACTCTGTCTTAAAAGGCCTCCCCACTGAAGAAAAAGATGAAAATGATGAAAACTCATTAAGCAGTTCCTCTG
ACTGTAGTGAAAACAAGGATGAAGAAATAAGTGAAGAAAGTGATATTGAAGAAAAGACTGAAGTGAAAGAAGAACCAGAG
CTTCAAACAAGAAGGGAAATGGAAGAAAGAACAATAACTATAGAAATCCCTGAAGTTCTGAAGAAGCAGCTGGAGGATGA
TTGTTACTACATTAACAGGAGGAAACGGTTAGTGAAACTTCCATGCCAGACCAACATCATAACGATTTTGGAATCCTATG
TGAAGCATTTTGCTATCAATGCAGCCTTTTCAGCCAATGAGAGGCCTCGTCACCATCACGTTATGCCACATGCCAACATG
AACGTGCATTATATCCCAGCAGAAAAGAATGTTGACCTTTGTAAGGAGATGGTGGATGGATTAAGAATAACCTTTGATTA
CACTCTCCCGTTGGTTTTACTCTATCCATATGAACAAGCTCAGTATAAAAAGGTGACTTCGTCTAAATTTTTTCTTCCAA
TTAAGGAAAGTGCCACAAGCACTAACAGGAGCCAGGAGGAACTCTCTCCCAGTCCGCCTTTGTTGAATCCATCCACGCCA
CAGTCCACAGAGAGTCAGCCGACCACCGGTGAACCAGCCACCCCCAAAAGGCGCAAAGCTGAGCCAGAAGCATTGCAGTC
TCTGAGGCGGTCCACGCGCCACAGTGCCAACTGTGACAGGCTTTCTGAGAGCAGCGCTTCACCTCAGCCCAAGCGCCGGC
AGCAGGACACATCCGCCAGCATGCCCAAGCTCTTCCTGCACCTGGAAAAGAAGACACCTGTGCATAGCAGATCATCTTCA
CCTATTCCTCTGACTCCTAGCAAGGAAGGGAGTGCTGTGTTTGCTGGCTTTGAAGGGAGAAGAACTAATGAAATAAACGA
GGTCCTCTCCTGGAAGCTTGTGCCTGACAATTACCCCCCAGGTGACCAGCCGCCTCCACCCTCTTACATTTATGGGGCAC
AACATTTGCTGCGATTGTTTGTGAAACTTCCAGAAATCCTTGGAAAGATGTCCTTTTCTGAGAAGAATCTGAAGGCTTTA
TTGAAGCACTTTGATCTCTTTTTGAGGTTTTTAGCAGAATACCACGATGACTTCTTCCCAGAGTCGGCTTATGTCGCTGC
CTGTGAGGCACATTACAGCACCAAGAACCCCCGGGCAATTTATTAA

Library Parental gene expression (RPM)
bodymap2_liver 9 .89 RPM
bodymap2_lung 24 .05 RPM
bodymap2_breast 26 .30 RPM
bodymap2_adipose 20 .45 RPM
bodymap2_adrenal 52 .24 RPM
bodymap2_skeletal_muscle 28 .43 RPM
bodymap2_thyroid 25 .10 RPM
bodymap2_prostate 23 .61 RPM
bodymap2_colon 27 .57 RPM
bodymap2_testis 52 .92 RPM
bodymap2_brain 23 .56 RPM
bodymap2_heart 13 .83 RPM
bodymap2_white_blood_cells 83 .73 RPM
bodymap2_lymph_node 83 .35 RPM
bodymap2_ovary 26 .51 RPM
bodymap2_kidney 21 .88 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000009278 ortholog_one2one 1 retrogene
retro_btau_883,
Callithrix jacchus ENSCJAG00000001061 ortholog_one2one 1 retrogene
retro_cjac_1490,
Cavia porcellus ENSCPOG00000004692 ortholog_one2many 5 retrogenes
retro_cpor_1423, retro_cpor_1424, retro_cpor_1425, retro_cpor_1426, retro_cpor_95,
Gorilla gorilla ENSGGOG00000006582 ortholog_one2one 2 retrogenes
retro_ggor_1820, retro_ggor_2749,
Macaca mulatta ENSMMUG00000002689 ortholog_one2one 2 retrogenes
retro_mmul_2362, retro_mmul_972,
Monodelphis domestica ENSMODG00000017350 ortholog_one2one 1 retrogene
retro_mdom_1422,
Pongo abelii ENSPPYG00000020123 ortholog_one2one 2 retrogenes
retro_pabe_2166, retro_pabe_3353,
Pan troglodytes ENSPTRG00000021662 ortholog_one2one 2 retrogenes
retro_ptro_1751, retro_ptro_2778,
Pteropus vampyrus ENSPVAG00000005000 ortholog_one2one 1 retrogene
retro_pvam_203,
Sorex araneus ENSSARG00000008477 ortholog_one2one 1 retrogene
retro_sara_139,
Tarsius syrichta ENSTSYG00000012788 ortholog_one2one 4 retrogenes
retro_tsyr_1079, retro_tsyr_1649, retro_tsyr_1706, retro_tsyr_948,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_hsap_2401 87.75 80.16
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2. retro_hsap_4097 72.89 52.98
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Download FASTA sequences of all ENSG00000005302 retrocopies