RetrogeneDB ID: | retro_hsap_4097 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 8:100352535..100353359(-) | ||
Located in intron of: | ENSG00000132549 | ||
Retrocopyinformation | Ensembl ID: | ENSG00000237704 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MSL3 | ||
Ensembl ID: | ENSG00000005302 | ||
Aliases: | MSL3, MSL3L1 | ||
Description: | male-specific lethal 3 homolog (Drosophila) [Source:HGNC Symbol;Acc:7370] |
Percent Identity: | 72.89 % |
Parental protein coverage: | 52.98 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 7 |
Parental | PAEKNVDLCKEMVDGLRITFDYTLPLVLLYPYEQAQYKKVTSSKFFLPIKESATSTNRSQEELSPSPPLL |
PAEKN.DLCKEMVDGLRITFDYT...V..YP.E.AQYKKVTS.K.FL.I.ES.T....SQ.ELSPSPPLL | |
Retrocopy | PAEKNADLCKEMVDGLRITFDYTTASVIIYPWE*AQYKKVTSAKCFLSITESTTDNKMSQGELSPSPPLL |
Parental | NPSTPQSTESQPTTGEPATPKRRKAEPEALQSLRRSTRHSANCDRLSES-SASPQ-PKRRQQDTSASM-P |
NPSTPQSTESQ.TT.EPAT.KR.KA.PEALQ.LRRS..H..NC.RL.ES..ASP..PK..QQ.TS.SM.P | |
Retrocopy | NPSTPQSTESQTTTAEPATHKRHKAKPEALQALRRSACHTTNCNRLAES<QASPR<PKCQQQATSTSM>P |
Parental | KLFLHLEKKTPVH-SRSSSPIPLTPSKEGSAVFAGFEGRRTNEINEVLSWKLVPDNYPPGDQPPPPS-YI |
.L.L.LE.KTPVH.S.S..P.P..PSKE.SA.F.GFEG.RTN.INEVLSWKLVPDNY.PGDQ.PPP...I | |
Retrocopy | RLLLNLENKTPVH<SSSTIPQP--PSKEESAAFTGFEGKRTN*INEVLSWKLVPDNYHPGDQTPPPP>HI |
Parental | YGAQHLLRLFVKLPEILGKMSFSEKNLKALLKHFDL-FLRFLAEY-HDDFF-PESAYVAACEAHYSTKNP |
YGAQHLL.L.VKLPEILG.MS.SEKNLKALLKHFDL.FL.FLAEY...D.F.PE.AYVAA.EA.YST..P | |
Retrocopy | YGAQHLL*LLVKLPEILGNMS*SEKNLKALLKHFDL<FLKFLAEY>YHDDFFPELAYVAAYEAYYST*KP |
Parental | RAIY |
.AIY | |
Retrocopy | PAIY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .06 RPM | 20 .45 RPM |
bodymap2_adrenal | 0 .00 RPM | 52 .24 RPM |
bodymap2_brain | 0 .00 RPM | 23 .56 RPM |
bodymap2_breast | 0 .00 RPM | 26 .30 RPM |
bodymap2_colon | 0 .00 RPM | 27 .57 RPM |
bodymap2_heart | 0 .00 RPM | 13 .83 RPM |
bodymap2_kidney | 0 .00 RPM | 21 .88 RPM |
bodymap2_liver | 0 .00 RPM | 9 .89 RPM |
bodymap2_lung | 0 .00 RPM | 24 .05 RPM |
bodymap2_lymph_node | 0 .00 RPM | 83 .35 RPM |
bodymap2_ovary | 0 .00 RPM | 26 .51 RPM |
bodymap2_prostate | 0 .00 RPM | 23 .61 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 28 .43 RPM |
bodymap2_testis | 0 .00 RPM | 52 .92 RPM |
bodymap2_thyroid | 0 .00 RPM | 25 .10 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 83 .73 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_2778 |
Gorilla gorilla | retro_ggor_2749 |
Callithrix jacchus | retro_cjac_1490 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000009278 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000001061 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000004692 | 5 retrocopies | |
Homo sapiens | ENSG00000005302 | 2 retrocopies |
retro_hsap_2401, retro_hsap_4097 ,
|
Gorilla gorilla | ENSGGOG00000006582 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000002689 | 2 retrocopies | |
Monodelphis domestica | ENSMODG00000017350 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000020123 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000021662 | 2 retrocopies | |
Pteropus vampyrus | ENSPVAG00000005000 | 1 retrocopy | |
Sorex araneus | ENSSARG00000008477 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000012788 | 4 retrocopies |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .04 RPM |
CEU_NA12751 | 0 .05 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .05 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .06 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .03 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .03 RPM |
GBR_HG00119 | 0 .02 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .02 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .04 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .03 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .03 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .02 RPM |