Parental gene: | MSL3, ENSCPOG00000004692 |
| Aliases: | None |
| Description: | None |
| Organism: | Guinea Pig (Cavia porcellus) |
| Coordinates: | scaffold_116:1571353..1587914(-) |
>ENSCPOG00000004692
ATGAGCTCAAGCGAGGGCATGAAATTTAAATTCCACTCAGGGGAGAAAGTGCTGTGCTTCGAGCCAGACCCCACCAAGGC
GCGAGTGCTGTACGATGCCAAGATTGTCGATGTTATTGTTGGGAAAGACGAAAAAGGCAGAAAGATCCCAGAATATCTGA
TCCATTTTAATGGTTGGAACAGAAGCTGGGATAGATGGGCAGCCGAAGATCATGTGCTTCGTGATACAGATGAAAATCGT
AGATTACAGCGTAAATTGGCAAGAAAAGCTGTAGCTCGCCTGAGAAGCACTGGCAAAAAGAAGAAGCGCTGCAGATTGCC
TGGTGTTGACTGTGTCTTAAAAAGCTTCCCTACTGAAGAAAAAAATGAAAATGATGAAAATTCCATAAGCAGTTCCTCTG
ATGACCGTGAAAAGGATGAAGAAATAAGTGAAGAAAGTGATATTGAAGAAAAGTCTGAAGTGAAAGAAGAACAAGAGCTG
CAAACAAGAAAGGAAATGGAAGAAAGATCAATAACTATAGACATCCCTGAGGTTCTGAAGAAGCAACTTGAAGATGACTG
TTACTATATTAACAGGAGGAAACGGTTAGTGAAGCTTCCATGCCAGACCAATATCATAACGATTTTGGAATCCTATGTGA
AGCATTTTGCTATCAACGCAGCCTTTTCAGCTACTGAGAGGCCTCGTCACCATCACGCTATGGTGCATGCCAACATGAAT
GTGCATTATATCCCAGCAGAAAAGAATGTTGACCTATGTAAGGAAATGGTGGATGGTCTGAGAATAACCTTTGACTATAC
GCTCCCATTAGTTTTGCTCTACCCATATGAACAAGCTCAGTATAAAAAGGTGACGTCATCTAAATTTTTTCTTCCAATTA
AAGAAAGTGCCACAAGCACTAACAGGAGCCAGGAGGAGCTCTCTCCTAGTCCACCTTTGTTGAATCCATCCACACCACAG
TCCACAGAGAGTCAGCCGACCACTGGTGAACCTGCCACCCCCAAGAGACGCAAAGCTGAGCCAGAAGCCTTGCAGTCTCT
GCGGCGATCCACACGCCACAGCACCAACTGCGACAGGTTGTCTGAGAGCAGCGCCTCGCCTCAGCCCAAGCGGCGGCAGC
AGGACACGTCCACCAGCATGCCCAAGCTGTTCCTGCATCTGGAAAAGAAGACGCCTGTGCATAGCAGATCATCTTCCCCC
ATTCCTCTGACTCCTAGTAAGGAAGGCAGTGGTGTGTTTGCTGGCTTTGAAGGGAGAAGAACTAATGAAATAAATGAGGT
CCTCTCCTGGAAGCTTGTGCCTGACAATTACCCTCCAGGTGACCAGCCACCTCCACCCTCTTATATTTATGGGGCACAAC
ATTTGCTGCGATTGTTTGTAAAACTTCCAGAAATCCTTGGAAAGATGTCCTTTTCTGAGAAGAATCTGAAGGCTTTACTG
AAGCACTTTGATCTCTTTCTGAGGTTTGTAGCAGAATACCATGATGACTTCTTCCCAGAGTCAGCTTATGTCGCTGCCTG
TGAGGCACACTATAGCACCAAGAACCCCAGGGCAATTTATTAG
ATGAGCTCAAGCGAGGGCATGAAATTTAAATTCCACTCAGGGGAGAAAGTGCTGTGCTTCGAGCCAGACCCCACCAAGGC
GCGAGTGCTGTACGATGCCAAGATTGTCGATGTTATTGTTGGGAAAGACGAAAAAGGCAGAAAGATCCCAGAATATCTGA
TCCATTTTAATGGTTGGAACAGAAGCTGGGATAGATGGGCAGCCGAAGATCATGTGCTTCGTGATACAGATGAAAATCGT
AGATTACAGCGTAAATTGGCAAGAAAAGCTGTAGCTCGCCTGAGAAGCACTGGCAAAAAGAAGAAGCGCTGCAGATTGCC
TGGTGTTGACTGTGTCTTAAAAAGCTTCCCTACTGAAGAAAAAAATGAAAATGATGAAAATTCCATAAGCAGTTCCTCTG
ATGACCGTGAAAAGGATGAAGAAATAAGTGAAGAAAGTGATATTGAAGAAAAGTCTGAAGTGAAAGAAGAACAAGAGCTG
CAAACAAGAAAGGAAATGGAAGAAAGATCAATAACTATAGACATCCCTGAGGTTCTGAAGAAGCAACTTGAAGATGACTG
TTACTATATTAACAGGAGGAAACGGTTAGTGAAGCTTCCATGCCAGACCAATATCATAACGATTTTGGAATCCTATGTGA
AGCATTTTGCTATCAACGCAGCCTTTTCAGCTACTGAGAGGCCTCGTCACCATCACGCTATGGTGCATGCCAACATGAAT
GTGCATTATATCCCAGCAGAAAAGAATGTTGACCTATGTAAGGAAATGGTGGATGGTCTGAGAATAACCTTTGACTATAC
GCTCCCATTAGTTTTGCTCTACCCATATGAACAAGCTCAGTATAAAAAGGTGACGTCATCTAAATTTTTTCTTCCAATTA
AAGAAAGTGCCACAAGCACTAACAGGAGCCAGGAGGAGCTCTCTCCTAGTCCACCTTTGTTGAATCCATCCACACCACAG
TCCACAGAGAGTCAGCCGACCACTGGTGAACCTGCCACCCCCAAGAGACGCAAAGCTGAGCCAGAAGCCTTGCAGTCTCT
GCGGCGATCCACACGCCACAGCACCAACTGCGACAGGTTGTCTGAGAGCAGCGCCTCGCCTCAGCCCAAGCGGCGGCAGC
AGGACACGTCCACCAGCATGCCCAAGCTGTTCCTGCATCTGGAAAAGAAGACGCCTGTGCATAGCAGATCATCTTCCCCC
ATTCCTCTGACTCCTAGTAAGGAAGGCAGTGGTGTGTTTGCTGGCTTTGAAGGGAGAAGAACTAATGAAATAAATGAGGT
CCTCTCCTGGAAGCTTGTGCCTGACAATTACCCTCCAGGTGACCAGCCACCTCCACCCTCTTATATTTATGGGGCACAAC
ATTTGCTGCGATTGTTTGTAAAACTTCCAGAAATCCTTGGAAAGATGTCCTTTTCTGAGAAGAATCTGAAGGCTTTACTG
AAGCACTTTGATCTCTTTCTGAGGTTTGTAGCAGAATACCATGATGACTTCTTCCCAGAGTCAGCTTATGTCGCTGCCTG
TGAGGCACACTATAGCACCAAGAACCCCAGGGCAATTTATTAG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_liver | 10 .75 RPM |
| SRP017611_kidney | 17 .38 RPM |
| SRP017611_brain | 12 .77 RPM |
| SRP040447_lung | 19 .22 RPM |
| SRP040447_skeletal_muscle | 22 .59 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Bos taurus | ENSBTAG00000009278 | ortholog_one2many | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000001061 | ortholog_many2many | 1 retrogene | |
| Homo sapiens | ENSG00000005302 | ortholog_one2many | 2 retrogenes | |
| Gorilla gorilla | ENSGGOG00000006582 | ortholog_one2many | 2 retrogenes | |
| Macaca mulatta | ENSMMUG00000002689 | ortholog_one2many | 2 retrogenes | |
| Monodelphis domestica | ENSMODG00000017350 | ortholog_one2many | 1 retrogene | |
| Pongo abelii | ENSPPYG00000020123 | ortholog_one2many | 2 retrogenes | |
| Pan troglodytes | ENSPTRG00000021662 | ortholog_one2many | 2 retrogenes | |
| Pteropus vampyrus | ENSPVAG00000005000 | ortholog_one2many | 1 retrogene | |
| Sorex araneus | ENSSARG00000008477 | ortholog_one2many | 1 retrogene | |
| Tarsius syrichta | ENSTSYG00000012788 | ortholog_one2many | 4 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cpor_95 | 65.44 | 51.92 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cpor_1423 | 54.11 | 55.38 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_cpor_1424 | 55.19 | 51.35 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_cpor_1425 | 59.29 | 52.50 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_cpor_1426 | 61.73 | 52.69 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCPOG00000004692 retrocopies