Parental gene:

RPS11, ENSSSCG00000003165

Aliases:None
Description:Sus scrofa ribosomal protein S11 (RPS11), mRNA. [Source:RefSeq mRNA;Acc:NM_001244070]
Organism:Pig (Sus scrofa)
Coordinates:6:50305906..50309892(+)


>ENSSSCG00000003165
ATGGCGGATATTCAGACCGAGCGTGCCTACCAAAAGCAGCCGACCATCTTTCAAAATAAGAAGAGGGTCCTGCTTGGCGA
AACTGGCAAGGAGAAGCTCCCGCGATACTACAAGAACATCGGCCTGGGCTTCAAGACACCGAAGGAGGCCATCGAGGGCA
CCTACATTGACAAGAAATGCCCTTTTACTGGTAACGTCTCCATCCGAGGGCGGATCCTGTCTGGCGTGGTGACCAAGATG
AAGATGCAGCGGACCATCGTCATCCGCCGAGACTACCTCCACTACATCCGAAAGTACAACCGCTTTGAGAAGCGCCACAA
GAATATGTCCGTGCACCTCTCCCCCTGCTTCAGGGACGTCCAGATCGGCGACATTGTCACAGTGGGCGAGTGTCGGCCCC
TGAGCAAGACGGTGCGCTTCAATGTGCTCAAGGTCACCAAGGCTGCTGGCACCAAGAAGCAGTTCCAGAAGTTCTGA

Library Parental gene expression (RPM)
SRP014902_placenta 1613 .61 RPM
SRP014902_testis 1679 .39 RPM
SRP018288_heart 543 .65 RPM
SRP018288_kidney 545 .33 RPM
SRP018288_liver 444 .39 RPM
SRP018288_lung 795 .06 RPM
SRP018856_adipose 1972 .04 RPM
SRP035408_brain 354 .80 RPM
SRP035408_liver 315 .66 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000014020 possible_ortholog 13 retrogenes
retro_amel_1038, retro_amel_1071, retro_amel_1398, retro_amel_1406, retro_amel_1475, retro_amel_246, retro_amel_262, retro_amel_317, retro_amel_64, retro_amel_757, retro_amel_759, retro_amel_764, retro_amel_859,
Bos taurus ENSBTAG00000013924 possible_ortholog 5 retrogenes
retro_btau_1282, retro_btau_1369, retro_btau_1499, retro_btau_1529, retro_btau_888,
Canis familiaris ENSCAFG00000003631 ortholog_one2one 9 retrogenes
retro_cfam_126, retro_cfam_1333, retro_cfam_1572, retro_cfam_1656, retro_cfam_1669, retro_cfam_1900, retro_cfam_1955, retro_cfam_2121, retro_cfam_248,
Callithrix jacchus ENSCJAG00000000069 possible_ortholog 1 retrogene
retro_cjac_340,
Danio rerio ENSDARG00000053058 ortholog_one2many 1 retrogene
retro_drer_15,
Dasypus novemcinctus ENSDNOG00000016107 ortholog_one2one 9 retrogenes
retro_dnov_1055, retro_dnov_1102, retro_dnov_1629, retro_dnov_1729, retro_dnov_188, retro_dnov_2520, retro_dnov_586, retro_dnov_68, retro_dnov_754,
Equus caballus ENSECAG00000000370 ortholog_one2one 1 retrogene
retro_ecab_868,
Felis catus ENSFCAG00000009196 possible_ortholog 13 retrogenes
retro_fcat_1362, retro_fcat_1491, retro_fcat_1535, retro_fcat_1564, retro_fcat_1719, retro_fcat_1945, retro_fcat_197, retro_fcat_1991, retro_fcat_273, retro_fcat_507, retro_fcat_792, retro_fcat_854, retro_fcat_995,
Gorilla gorilla ENSGGOG00000002936 ortholog_one2one 6 retrogenes
retro_ggor_1525, retro_ggor_2843, retro_ggor_2900, retro_ggor_292, retro_ggor_805, retro_ggor_842,
Myotis lucifugus ENSMLUG00000030475 ortholog_one2one 1 retrogene
retro_mluc_539,
Macaca mulatta ENSMMUG00000007549 ortholog_one2one 6 retrogenes
retro_mmul_1147, retro_mmul_1856, retro_mmul_2464, retro_mmul_413, retro_mmul_634, retro_mmul_813,
Monodelphis domestica ENSMODG00000013434 ortholog_one2one 7 retrogenes
retro_mdom_1185, retro_mdom_1284, retro_mdom_1421, retro_mdom_1950, retro_mdom_636, retro_mdom_922, retro_mdom_978,
Otolemur garnettii ENSOGAG00000004627 ortholog_one2one 7 retrogenes
retro_ogar_1290, retro_ogar_1813, retro_ogar_1910, retro_ogar_2037, retro_ogar_2573, retro_ogar_2640, retro_ogar_840,
Pan troglodytes ENSPTRG00000011299 ortholog_one2many 1 retrogene
retro_ptro_88,
Rattus norvegicus ENSRNOG00000020595 possible_ortholog 18 retrogenes
retro_rnor_1132, retro_rnor_1159, retro_rnor_1261, retro_rnor_1299, retro_rnor_1363, retro_rnor_1414, retro_rnor_1435, retro_rnor_1451, retro_rnor_1635, retro_rnor_1790, retro_rnor_2000, retro_rnor_2647, retro_rnor_385, retro_rnor_394, retro_rnor_538, retro_rnor_737, retro_rnor_835, retro_rnor_989,
Sorex araneus ENSSARG00000003236 possible_ortholog 2 retrogenes
retro_sara_11, retro_sara_469,
Ictidomys tridecemlineatus ENSSTOG00000023443 possible_ortholog 2 retrogenes
retro_itri_1033, retro_itri_805,
Tupaia belangeri ENSTBEG00000016677 ortholog_one2one 16 retrogenes
retro_tbel_125, retro_tbel_1361, retro_tbel_1753, retro_tbel_2071, retro_tbel_2207, retro_tbel_2808, retro_tbel_2947, retro_tbel_319, retro_tbel_3401, retro_tbel_3571, retro_tbel_3600, retro_tbel_3742, retro_tbel_449, retro_tbel_604, retro_tbel_801, retro_tbel_836,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_432 71.97 98.73
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2. retro_sscr_887 60.14 91.14
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Download FASTA sequences of all ENSSSCG00000003165 retrocopies