Parental gene:

RPS11, ENSDNOG00000016107

Aliases:None
Description:ribosomal protein S11 [Source:HGNC Symbol;Acc:10384]
Organism:Armadillo (Dasypus novemcinctus)
Coordinates:scaffold_92272:946..3276(-)


>ENSDNOG00000016107
ATGGCGGACATTCAGACTGAGCGTGCCTACCAAAAGCAGCCAACGATCTTCCAAAACAAGAAGAGGGTGCTGCTTGGAGA
AACCGGCAAGGAGAAGCTCCCACGTTACTACAAGAATATCGGTCTGGGCTTCAAGACTCCCAAGGAGGCCATTGAGGGCA
CCTACATCGACAAGAAATGCCCCTTCACTGGTAACGTTTCCATCCGAGGCCGCATCCTGTCTGGCGTGGTCACCAAGATG
AAGATGCAGAGGACCATCGTCATCCGCAGGGACTACCTCCACTACATCCGCAAGTACAACCGCTTCGAGAAGCGCCACAA
GAACATGTCTGTGCACCTGTCCCCCTGCTTCAGGGACGTCCAGATCGGCGACATCGTCACGGTGGGCGAGTGCCGGCCCC
TGAGCAAGACCGTGCGCTTCAACGTGCTCAAGGTCACCAAGGCCGCCGGCACCAAGAAGCAGTTCCAGAAGTTCTGA

Library Parental gene expression (RPM)
SRP012922_ascending_colon 820 .07 RPM
SRP012922_cerebellum 467 .53 RPM
SRP012922_heart 493 .76 RPM
SRP012922_kidney 1008 .11 RPM
SRP012922_liver 581 .14 RPM
SRP012922_lung 1321 .52 RPM
SRP012922_quadricep_muscle 854 .34 RPM
SRP012922_spleen 1618 .60 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000014020 possible_ortholog 13 retrogenes
retro_amel_1038, retro_amel_1071, retro_amel_1398, retro_amel_1406, retro_amel_1475, retro_amel_246, retro_amel_262, retro_amel_317, retro_amel_64, retro_amel_757, retro_amel_759, retro_amel_764, retro_amel_859,
Bos taurus ENSBTAG00000013924 possible_ortholog 5 retrogenes
retro_btau_1282, retro_btau_1369, retro_btau_1499, retro_btau_1529, retro_btau_888,
Canis familiaris ENSCAFG00000003631 ortholog_one2one 9 retrogenes
retro_cfam_126, retro_cfam_1333, retro_cfam_1572, retro_cfam_1656, retro_cfam_1669, retro_cfam_1900, retro_cfam_1955, retro_cfam_2121, retro_cfam_248,
Callithrix jacchus ENSCJAG00000000069 possible_ortholog 1 retrogene
retro_cjac_340,
Danio rerio ENSDARG00000053058 ortholog_one2many 1 retrogene
retro_drer_15,
Equus caballus ENSECAG00000000370 ortholog_one2one 1 retrogene
retro_ecab_868,
Felis catus ENSFCAG00000009196 possible_ortholog 13 retrogenes
retro_fcat_1362, retro_fcat_1491, retro_fcat_1535, retro_fcat_1564, retro_fcat_1719, retro_fcat_1945, retro_fcat_197, retro_fcat_1991, retro_fcat_273, retro_fcat_507, retro_fcat_792, retro_fcat_854, retro_fcat_995,
Gorilla gorilla ENSGGOG00000002936 ortholog_one2one 6 retrogenes
retro_ggor_1525, retro_ggor_2843, retro_ggor_2900, retro_ggor_292, retro_ggor_805, retro_ggor_842,
Myotis lucifugus ENSMLUG00000030475 ortholog_one2one 1 retrogene
retro_mluc_539,
Macaca mulatta ENSMMUG00000007549 ortholog_one2one 6 retrogenes
retro_mmul_1147, retro_mmul_1856, retro_mmul_2464, retro_mmul_413, retro_mmul_634, retro_mmul_813,
Monodelphis domestica ENSMODG00000013434 ortholog_one2one 7 retrogenes
retro_mdom_1185, retro_mdom_1284, retro_mdom_1421, retro_mdom_1950, retro_mdom_636, retro_mdom_922, retro_mdom_978,
Otolemur garnettii ENSOGAG00000004627 ortholog_one2one 7 retrogenes
retro_ogar_1290, retro_ogar_1813, retro_ogar_1910, retro_ogar_2037, retro_ogar_2573, retro_ogar_2640, retro_ogar_840,
Pan troglodytes ENSPTRG00000011299 ortholog_one2many 1 retrogene
retro_ptro_88,
Rattus norvegicus ENSRNOG00000020595 possible_ortholog 18 retrogenes
retro_rnor_1132, retro_rnor_1159, retro_rnor_1261, retro_rnor_1299, retro_rnor_1363, retro_rnor_1414, retro_rnor_1435, retro_rnor_1451, retro_rnor_1635, retro_rnor_1790, retro_rnor_2000, retro_rnor_2647, retro_rnor_385, retro_rnor_394, retro_rnor_538, retro_rnor_737, retro_rnor_835, retro_rnor_989,
Sorex araneus ENSSARG00000003236 possible_ortholog 2 retrogenes
retro_sara_11, retro_sara_469,
Sus scrofa ENSSSCG00000003165 ortholog_one2one 2 retrogenes
retro_sscr_432, retro_sscr_887,
Ictidomys tridecemlineatus ENSSTOG00000023443 possible_ortholog 2 retrogenes
retro_itri_1033, retro_itri_805,
Tupaia belangeri ENSTBEG00000016677 ortholog_one2one 16 retrogenes
retro_tbel_125, retro_tbel_1361, retro_tbel_1753, retro_tbel_2071, retro_tbel_2207, retro_tbel_2808, retro_tbel_2947, retro_tbel_319, retro_tbel_3401, retro_tbel_3571, retro_tbel_3600, retro_tbel_3742, retro_tbel_449, retro_tbel_604, retro_tbel_801, retro_tbel_836,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_dnov_68 77.98 67.72
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2. retro_dnov_188 84.28 100.00
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3. retro_dnov_586 73.12 100.00
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4. retro_dnov_754 65.38 81.01
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5. retro_dnov_1055 81.76 100.00
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6. retro_dnov_1102 88.61 100.00
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7. retro_dnov_1629 83.70 57.59
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8. retro_dnov_1729 86.02 58.23
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9. retro_dnov_2520 71.70 100.00
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Download FASTA sequences of all ENSDNOG00000016107 retrocopies