Parental gene:

PSAT1, ENSCAFG00000001570

Aliases:None
Description:phosphoserine aminotransferase 1 [Source:HGNC Symbol;Acc:19129]
Organism:Dog (Canis familiaris)
Coordinates:1:80377575..80408331(-)


>ENSCAFG00000001570
TGGCGGCGCCGGCTGGGAGCCGGGAGCCGGAGCCGGGAGCCGGAGACCGCGCGCCCGCCGCACACTCGCGCCGCGCACCC
GATTCGCCGCTCCCCGCCGCCCCGTCGCCTGCGCTGCCGCACCATGAGCGCCCCGAGGCAGGTGGTCAACTTCGGGCCCG
GGCCTGCCAAGCTGCCTCGCTCGGTACTGTTAGAGATACAAAAAGAATTATTAGACTACAAAGGAATCGGAATTAGTGTT
CTTGAAATGAGCCACAGATCATCAGATTTTGCCAAGATTATTAACAACGCAGAGAATCTTGTGCGGGAATTGTTAGCCGT
TCCAGACAACTACAAGGTGATTTTTGTGCAAGGTGGTGGGTCTGGGCAGTTCAGTGCTGTCCCCTTAAACCTGATTAGCC
GGAAAGCAGGAAGGTGTGCCGACTATGTGGTGACAGGATCTTGGTCAGCTAAGGCCGCTGAAGAAGCCAAGAAGTTTGGG
ACTGTGAATGTCGTCCACCCTAAACTTGGGAGTTACACGAAAATTCCAGATCCAAGCACCTGGAACCTCAGCCCGGATGC
CTCCTATGTGTATTACTGCGCCAACGAGACCGTGCATGGAGTGGAGTTTGACTTTATCCCTGACGTCAAGGGAGCAGTGC
TGGTTTGCGACATGTCCTCAAACTTCCTGTCCAAGCCAGTGGATGTTTCCAAGTTTGGTGTGATTTTTGCTGGTGCCCAG
AAGAATGTGGGCTCTGCTGGGGTCACGATTGTGATCATCCGTGACGACCTGCTGGGGTTCGCCCTCAGAGAGTGCCCCTC
GGTCCTGGAATACAAAGTGCAGGCTGGAAACAGCTCCTTGTACAACACACCGCCGTGCTTCAGCATCTATGTCATGGGCC
TGGTCCTGGAGTGGATTAAGAACAATGGTGGTGCAGCAGCCATGGAGAAGCTCAGCTCCATCAAATCGCAAATGATCTAT
GATATTATTGATAATTCTCAAGGATTCTACGTATGTCCAGTGGAGACCAAGAACAGGAGCAAGATGAATATTCCATTCCG
CATTGGCAATGCCAAAGGAGATGATGCTTTAGAAAAAAGATTTCTTGATAAAGCTCTCGAACTCAATATGATTTCCTTAA
AGGGGCATAGGTCTGTGGGAGGCATCCGGGCCTCTCTGTATAATGCTGTCACGATTGAGGATGTTCAGAAGTTGGCAGCC
TTCATGAAGAACTTTTTGGAGATGCATCAGCTGTGA

Library Parental gene expression (RPM)
SRP017611_brain 42 .87 RPM
SRP017611_kidney 49 .00 RPM
SRP017611_liver 2 .83 RPM
SRP012049_cerebellum 89 .25 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000006898 ortholog_one2one 1 retrogene
retro_amel_375,
Bos taurus ENSBTAG00000013960 ortholog_one2one 1 retrogene
retro_btau_1658,
Choloepus hoffmanni ENSCHOG00000003817 ortholog_one2one 1 retrogene
retro_chof_2702,
Callithrix jacchus ENSCJAG00000003319 ortholog_one2many 1 retrogene
retro_cjac_1203,
Echinops telfairi ENSETEG00000004158 ortholog_one2one 1 retrogene
retro_etel_99,
Homo sapiens ENSG00000135069 ortholog_one2one 3 retrogenes
retro_hsap_2267, retro_hsap_4054, retro_hsap_412,
Gorilla gorilla ENSGGOG00000015480 ortholog_one2one 1 retrogene
retro_ggor_407,
Loxodonta africana ENSLAFG00000017917 ortholog_one2one 2 retrogenes
retro_lafr_1249, retro_lafr_660,
Macaca mulatta ENSMMUG00000011868 ortholog_one2many 2 retrogenes
retro_mmul_1029, retro_mmul_2341,
Mustela putorius furo ENSMPUG00000012566 ortholog_one2one 1 retrogene
retro_mputfur_808,
Nomascus leucogenys ENSNLEG00000002989 ortholog_one2one 3 retrogenes
retro_nleu_1010, retro_nleu_1288, retro_nleu_2805,
Oryctolagus cuniculus ENSOCUG00000007765 ortholog_one2one 1 retrogene
retro_ocun_1092,
Pongo abelii ENSPPYG00000019313 ortholog_one2one 3 retrogenes
retro_pabe_1950, retro_pabe_308, retro_pabe_3328,
Pan troglodytes ENSPTRG00000021045 ortholog_one2one 2 retrogenes
retro_ptro_1606, retro_ptro_316,
Rattus norvegicus ENSRNOG00000013971 ortholog_one2one 1 retrogene
retro_rnor_1663,
Tupaia belangeri ENSTBEG00000012946 ortholog_one2one 1 retrogene
retro_tbel_1577,
Tarsius syrichta ENSTSYG00000000093 ortholog_one2one 2 retrogenes
retro_tsyr_1073, retro_tsyr_1212,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cfam_269 63.18 51.58
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Download FASTA sequences of all ENSCAFG00000001570 retrocopies