RetrogeneDB ID: | retro_tsyr_1073 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_29667:9577..10693(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PSAT1 | ||
Ensembl ID: | ENSTSYG00000000093 | ||
Aliases: | None | ||
Description: | phosphoserine aminotransferase 1 [Source:HGNC Symbol;Acc:19129] |
Percent Identity: | 80.21 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 3 |
Parental | MDAAKQVVNFG-PGPAKLPPSL-LEIQK-ELLDYKGVGISVLEMSHRSSDFTKIISKTEKLLRELLAVPD |
MDA.KQVVNF...GPAKLP.S...EI...ELLDYKGV.I..LEM.HRSSDF.KII.KTE.LL..LLAV.D | |
Retrocopy | MDATKQVVNFH>SGPAKLPHSV*FEIXXXELLDYKGVDINILEMNHRSSDFAKIINKTENLLQDLLAVFD |
Parental | NYKVIFVQGGGSGQFSAVPLNLIGLKAGRCADYVVTGAWSAKAAEEAKKFGTVNIVHPKLGSYTKIPDPS |
NYKVIFV.GGGS.QF..VPLNLIGLKAG.CADY.VTGAWSAK.AEEAKKFGTVNIVHPKLGSYTKI.DPS | |
Retrocopy | NYKVIFV*GGGSDQFNGVPLNLIGLKAGGCADYMVTGAWSAKTAEEAKKFGTVNIVHPKLGSYTKISDPS |
Parental | TWDLSPEASYVYYCANETVHGVEFDFIPDVKGAVLVCDMSSNFLSKPVDVSKFGVI-LAGAQKNVGPAGV |
TWDL..EASYV.YCANET.HGVEFDFIPDVKG.VLVC.MSSNFLSKPVDVS.FG.I..AGAQKNVGP.GV | |
Retrocopy | TWDLNLEASYVHYCANETMHGVEFDFIPDVKGVVLVCNMSSNFLSKPVDVSTFGAI>FAGAQKNVGPVGV |
Parental | TVVIVRDDLLGFALRECPSVLEYKVLAGNNSLYNTPPCFSIYVVGLVLEWIKNNGGAAAMEKLSSIKSQM |
TVVIVRDDLLGFALRECPSVL.YKVLA..NSLY..PP..SIYV..L.LEWIKNN.G.AA.EKL..IK.QM | |
Retrocopy | TVVIVRDDLLGFALRECPSVL*YKVLADSNSLYSMPP*ISIYVMSLFLEWIKNNRGIAAVEKLNFIKYQM |
Parental | IYEIIDNSQGFYVCLVESQNRSKMNIPFRIGSAKGDDALEKR-FLDKALELNMISLKGHRSVGGIRVSLY |
IYEIID.SQGFY.C.VESQNRSKMNIPFRIG.AKGD.ALE...FLDK.LELNMISLKGHR.VG.I.VSLY | |
Retrocopy | IYEIIDHSQGFYICSVESQNRSKMNIPFRIGNAKGDNALENN>FLDKPLELNMISLKGHRFVGAIWVSLY |
Parental | NAITIEDVQKLAAFMKNFLEMHQL |
..IT.ED.QKLA.FMK.FLEMHQL | |
Retrocopy | KVITLEDIQKLATFMKKFLEMHQL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000006898 | 1 retrocopy | |
Bos taurus | ENSBTAG00000013960 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000001570 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000003817 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000003319 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000004158 | 1 retrocopy | |
Homo sapiens | ENSG00000135069 | 3 retrocopies | |
Gorilla gorilla | ENSGGOG00000015480 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000017917 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000011868 | 2 retrocopies | |
Mustela putorius furo | ENSMPUG00000012566 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000002989 | 3 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000007765 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000019313 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000021045 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000013971 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000012946 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000000093 | 2 retrocopies |
retro_tsyr_1073 , retro_tsyr_1212,
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