Parental gene: | PSAT1, ENSPPYG00000019313 |
| Aliases: | None |
| Description: | phosphoserine aminotransferase 1 [Source:HGNC Symbol;Acc:19129] |
| Organism: | Orangutan (Pongo abelii) |
| Coordinates: | 9:73291999..73324871(+) |
>ENSPPYG00000019313
ATGGGGCGCCGACTCGGCGCTGTAACAAGGCGGGGGTTCGGAGCCGGCTGCAGACTCTCACCGCAGCGTCCAGGAACGCC
AGCCGTTCACGCGTTCGGTCCTCCTTGGCTGACTCACCGCCCTCGCCGCCGCACCATGGACGCCCCCAGGCAGGTGGTCA
ACTTTGGGCCTGGTCCCGCCAAGCTGCCCCACTCAGTGTTGTTAGAGATACAAAAGGAATTATTAGACTACAAAGGAGTT
GGCATTAGTGTTCTTGAAATGAGTCACAGGTCATCAGATTTTGCCAAGATTATTAACAATACAGAGAATCTTGTGCGGGA
ATTGCTAGCTGTTCCAGACAACTATAAGGTGATTTTTTTGCAAGGAGGTGGGTCCGGCCAGTTCAGTGCTGTCCCCTTAA
ACCTGATTGGCTTGAAAGCAGGAAGGTGTGCGGACTATGTGGTGACAGGAGCTTGGTCAGCTAAGGCCGCAGAAGAAGCC
AAGAAGTTTGGGACTATAAATATCGTTCACCCTAAACTTGGGAGTTATACAAAAATTCCAGATCCAAGCACCTGGAACCT
CAACCCAGATGCCTCCTACGTGTATTATTGCGCAAATGAGACGGTGCATGGTGTGGAGTTTGACTTTATACCCGATGTCA
AGGGAGCAGTACTGGTTTGTGACATGTCCTCAAACTTCCTGTCCAAGCCAGTGGATGTTTCCAAGTTTGGTGTGATTTTT
GCTGGTGCCCAGAAGAATGTTGGCTCTGCTGGGGTCACCGTGGTGATTGTCCGTGATGACCTGCTGGGGTTTGCCCTCCG
AGAGTGCCCCTCGGTCCTGGAATACAAGGTGCAGGCTGGAAACAGCTCCTTGTACAACACGCCTCCATGTTTCAGCATCT
ACGTCATGGGCTTGGTTCTGGAGTGGATTAAAAACAATGGAGGTGCCACGGCCATGGAGAAGCTTAGCTCCACCAAATCT
CAAACGATTTATGAGATTATTGATAATTCTCAAGGATTCTATGTATGTCCAGTGGAGCCCCAAAATAGAAGCAAGATGAA
TATTCCATTCCGCATTGGCAATGCCAAAGGAGATGATGCTTTAGAAAAAAGATTTCTTGATAAAGCTCTTGAACTCAATA
TGTTGTCCTTGAAAGGGCATAGGTCTGTGGGAGGCATCCGGGCCTCTCTGTATAATGCTGTCACAATTGAAGATGTTCAG
AAGCTGGCCGCCTTTATGAAAAAATTTTTGGAGATGCATCAGCTATGA
ATGGGGCGCCGACTCGGCGCTGTAACAAGGCGGGGGTTCGGAGCCGGCTGCAGACTCTCACCGCAGCGTCCAGGAACGCC
AGCCGTTCACGCGTTCGGTCCTCCTTGGCTGACTCACCGCCCTCGCCGCCGCACCATGGACGCCCCCAGGCAGGTGGTCA
ACTTTGGGCCTGGTCCCGCCAAGCTGCCCCACTCAGTGTTGTTAGAGATACAAAAGGAATTATTAGACTACAAAGGAGTT
GGCATTAGTGTTCTTGAAATGAGTCACAGGTCATCAGATTTTGCCAAGATTATTAACAATACAGAGAATCTTGTGCGGGA
ATTGCTAGCTGTTCCAGACAACTATAAGGTGATTTTTTTGCAAGGAGGTGGGTCCGGCCAGTTCAGTGCTGTCCCCTTAA
ACCTGATTGGCTTGAAAGCAGGAAGGTGTGCGGACTATGTGGTGACAGGAGCTTGGTCAGCTAAGGCCGCAGAAGAAGCC
AAGAAGTTTGGGACTATAAATATCGTTCACCCTAAACTTGGGAGTTATACAAAAATTCCAGATCCAAGCACCTGGAACCT
CAACCCAGATGCCTCCTACGTGTATTATTGCGCAAATGAGACGGTGCATGGTGTGGAGTTTGACTTTATACCCGATGTCA
AGGGAGCAGTACTGGTTTGTGACATGTCCTCAAACTTCCTGTCCAAGCCAGTGGATGTTTCCAAGTTTGGTGTGATTTTT
GCTGGTGCCCAGAAGAATGTTGGCTCTGCTGGGGTCACCGTGGTGATTGTCCGTGATGACCTGCTGGGGTTTGCCCTCCG
AGAGTGCCCCTCGGTCCTGGAATACAAGGTGCAGGCTGGAAACAGCTCCTTGTACAACACGCCTCCATGTTTCAGCATCT
ACGTCATGGGCTTGGTTCTGGAGTGGATTAAAAACAATGGAGGTGCCACGGCCATGGAGAAGCTTAGCTCCACCAAATCT
CAAACGATTTATGAGATTATTGATAATTCTCAAGGATTCTATGTATGTCCAGTGGAGCCCCAAAATAGAAGCAAGATGAA
TATTCCATTCCGCATTGGCAATGCCAAAGGAGATGATGCTTTAGAAAAAAGATTTCTTGATAAAGCTCTTGAACTCAATA
TGTTGTCCTTGAAAGGGCATAGGTCTGTGGGAGGCATCCGGGCCTCTCTGTATAATGCTGTCACAATTGAAGATGTTCAG
AAGCTGGCCGCCTTTATGAAAAAATTTTTGGAGATGCATCAGCTATGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 12 .88 RPM |
| SRP007412_cerebellum | 10 .21 RPM |
| SRP007412_heart | 0 .33 RPM |
| SRP007412_kidney | 74 .61 RPM |
| SRP007412_liver | 29 .50 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000006898 | ortholog_one2many | 1 retrogene | |
| Bos taurus | ENSBTAG00000013960 | ortholog_one2one | 1 retrogene | |
| Canis familiaris | ENSCAFG00000001570 | ortholog_one2one | 1 retrogene | |
| Choloepus hoffmanni | ENSCHOG00000003817 | ortholog_one2one | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000003319 | ortholog_one2many | 1 retrogene | |
| Echinops telfairi | ENSETEG00000004158 | ortholog_one2one | 1 retrogene | |
| Homo sapiens | ENSG00000135069 | ortholog_one2one | 3 retrogenes | |
| Loxodonta africana | ENSLAFG00000017917 | ortholog_one2one | 2 retrogenes | |
| Macaca mulatta | ENSMMUG00000011868 | ortholog_one2many | 2 retrogenes | |
| Mustela putorius furo | ENSMPUG00000012566 | ortholog_one2one | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000002989 | ortholog_one2one | 3 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000007765 | ortholog_one2one | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000021045 | ortholog_one2one | 2 retrogenes | |
| Rattus norvegicus | ENSRNOG00000013971 | ortholog_one2one | 1 retrogene | |
| Tupaia belangeri | ENSTBEG00000012946 | ortholog_one2one | 1 retrogene | |
| Tarsius syrichta | ENSTSYG00000000093 | ortholog_one2one | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_pabe_308 | 89.52 | 50.60 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_pabe_1950 | 61.97 | 54.94 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_pabe_3328 | 87.84 | 61.45 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPPYG00000019313 retrocopies