RetrogeneDB ID: | retro_lafr_1249 | ||
Retrocopylocation | Organism: | Elephant (Loxodonta africana) | |
Coordinates: | scaffold_96:4022546..4023174(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PSAT1 | ||
Ensembl ID: | ENSLAFG00000017917 | ||
Aliases: | None | ||
Description: | Phosphoserine aminotransferase [Source:UniProtKB/TrEMBL;Acc:G3TJT4] |
Percent Identity: | 81.31 % |
Parental protein coverage: | 57.3 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | CANETVHGVEFDFIPDVKGAVLVCDMSSNFLSKPVDVSKFGVIFAGAQKNVGSAGVTVVIV-RDDLLGFA |
C.N.TVHG.EFDFIPDV.GA.LVCDMSS.FLSKPVDVSK....FAGAQKNV.SAGV.VVIV..DDLLGF. | |
Retrocopy | CTNKTVHGMEFDFIPDVRGAALVCDMSSSFLSKPVDVSK--QVFAGAQKNVSSAGVMVVIV<HDDLLGFT |
Parental | LQECPSILEYKVQAGNNSLYNTPPCFSIYVMGLVLEWIKNNGGAAAMEKLSSI-KSEMIYDIIDNSQGFY |
L.E..SILEYKVQAGNNSLYN.PPCFSIYV.GLVLE.IKNNG.A.AMEKLSS...S.MI.DIIDN.QGF. | |
Retrocopy | L*ESFSILEYKVQAGNNSLYNMPPCFSIYVIGLVLE*IKNNGNATAMEKLSSM<ESQMIDDIIDNAQGFC |
Parental | VCPVEPQNRSKMNIPFRIGNAKGDDALEKRFVDKALELNMLSLKGHRSVGGIRASLYNAVTIEDVQKLAA |
VCPVEPQNRSKMNIPF.IGN.KGDDALEKRFV.KALELNM.SLK.HRS..GI.ASLYN.VTIEDVQKL.A | |
Retrocopy | VCPVEPQNRSKMNIPFHIGNTKGDDALEKRFVVKALELNMVSLKEHRSMEGIHASLYNTVTIEDVQKLTA |
Parental | FMKN |
FMKN | |
Retrocopy | FMKN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000006898 | 1 retrocopy | |
Bos taurus | ENSBTAG00000013960 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000001570 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000003817 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000003319 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000004158 | 1 retrocopy | |
Homo sapiens | ENSG00000135069 | 3 retrocopies | |
Gorilla gorilla | ENSGGOG00000015480 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000017917 | 2 retrocopies |
retro_lafr_1249 , retro_lafr_660,
|
Macaca mulatta | ENSMMUG00000011868 | 2 retrocopies | |
Mustela putorius furo | ENSMPUG00000012566 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000002989 | 3 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000007765 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000019313 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000021045 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000013971 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000012946 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000000093 | 2 retrocopies |