RetrogeneDB ID: | retro_mmul_1029 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 13:62769148..62769751(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.10169 | ||
Ensembl ID: | ENSMMUG00000011868 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 63.33 % |
Parental protein coverage: | 62.96 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 6 |
Parental | YKVIFLQGGGSGQFGAVPLNLIGLKAGRCADYVVTGAWSAKAAEEAKKFGTINIVHPKLGSYTKIPDP-S |
YKVIF.Q.GGSGQF..VPLN...LKAGRCADYVV.GAWSAKAAE..KKF...NI..PKLGSY.KIPD... | |
Retrocopy | YKVIFVQEGGSGQFSTVPLNPKCLKAGRCADYVVAGAWSAKAAEASKKFEIVNISYPKLGSYMKIPDS<N |
Parental | TWN-LNPDASYVYYCANETVHGVEFDFIPDVK-GAVLVCDMSSNFLSKPVDVSKFGVIFAGAQKNVGSAG |
TWN.L.P...YV.YC.N...H.V.FDFI.D....A.LV...SSNFLS..VD.S.FGVIFAGAQK..G..G | |
Retrocopy | TWN<LHPYSFYV*YCTNDW-HRVAFDFISDLR<EALLVFHISSNFLSQAVDASGFGVIFAGAQKHIGCFG |
Parental | VTVVIVRDD-LLG-FALRECPSVLEYKVQAGNSSLYNTPPCFSIYVM-GLVLEWIKNNGGAAAMEKLSSI |
.TVVI...D.LLG...LRE.P..LEYKV..GN..LYN....FS.YVM.GL.L..IKN.G.AA.MEKL..I | |
Retrocopy | MTVVIICND<LLG<VTLREWPFILEYKVHVGNNFLYNMQQYFSNYVM<GLFLV*IKNDGTAAVMEKLHQI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 47 .85 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 57 .99 RPM |
SRP007412_cerebellum | 0 .00 RPM | 32 .22 RPM |
SRP007412_heart | 0 .00 RPM | 2 .30 RPM |
SRP007412_kidney | 0 .00 RPM | 64 .79 RPM |
SRP007412_liver | 0 .00 RPM | 121 .36 RPM |
SRP007412_testis | 0 .00 RPM | 12 .06 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000006898 | 1 retrocopy | |
Bos taurus | ENSBTAG00000013960 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000001570 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000003817 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000003319 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000004158 | 1 retrocopy | |
Homo sapiens | ENSG00000135069 | 3 retrocopies | |
Gorilla gorilla | ENSGGOG00000015480 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000017917 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000011868 | 2 retrocopies |
retro_mmul_1029 , retro_mmul_2341,
|
Mustela putorius furo | ENSMPUG00000012566 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000002989 | 3 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000007765 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000019313 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000021045 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000013971 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000012946 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000000093 | 2 retrocopies |