RetrogeneDB ID: | retro_hsap_2267 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 2:62779690..62780369(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000232144 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PSAT1 | ||
Ensembl ID: | ENSG00000135069 | ||
Aliases: | PSAT1, EPIP, PSA, PSAT | ||
Description: | phosphoserine aminotransferase 1 [Source:HGNC Symbol;Acc:19129] |
Percent Identity: | 64.96 % |
Parental protein coverage: | 61.62 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 5 |
Parental | YKVIFLQGGGCGQFSAVPLNLIGLKAGRCADYVVTGAWSAKAAEEAKKFGTINIVHPKLGSYTKIPDP-S |
YKVIF.Q.GG.GQFSAVPLN...LKAGRCA.YVVTGAWSAKAAE..KKF...NI..PKLGSY.KIPD... | |
Retrocopy | YKVIFVQEGGSGQFSAVPLNPKCLKAGRCANYVVTGAWSAKAAEASKKFEIVNISYPKLGSYMKIPDS<N |
Parental | TWNLNPDASY-VYYCANETVHGVEFDFIPDVK-GAVLVCDMSSNFLSKPVDVSKFGVIFAGAQKNVGSAG |
TWNL...AS..V..C.N...H.VE.DFI.D....A.LVC..SSNFLSK.VD.S.FGVIFAGAQK.VG..G | |
Retrocopy | TWNLTLTASM<V*CCTNDW-HRVESDFISDLR<EALLVCHISSNFLSKAVDASRFGVIFAGAQKHVGCFG |
Parental | VTVVIVRDD-LLG-FALRECPSVLEYKVQAGNSSLYNTPPCFSIYVMGLVLEWIKNNGGAAAMEKLSSIK |
.TVVI...D.LLG...LRE.PS..EYKV..GN..LYN....FS.YVMGL.L..IKN.G.AA..EKLSSIK | |
Retrocopy | MTVVIICND<LLG<VTLREWPSIREYKVHVGNNFLYNMQQYFSNYVMGLFLV*IKNDGTAAVVEKLSSIK |
Parental | SQ-TIYEIIDNSQGFYVCPVEPQN |
S...IY.I..NS.GFY..PVEP.N | |
Retrocopy | SKIIIYDIFNNS*GFYEHPVEPHN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 7 .67 RPM |
bodymap2_adrenal | 0 .00 RPM | 15 .05 RPM |
bodymap2_brain | 0 .00 RPM | 165 .49 RPM |
bodymap2_breast | 0 .00 RPM | 10 .74 RPM |
bodymap2_colon | 0 .00 RPM | 3 .42 RPM |
bodymap2_heart | 0 .00 RPM | 0 .42 RPM |
bodymap2_kidney | 0 .00 RPM | 113 .78 RPM |
bodymap2_liver | 0 .00 RPM | 128 .94 RPM |
bodymap2_lung | 0 .00 RPM | 1 .81 RPM |
bodymap2_lymph_node | 0 .00 RPM | 19 .06 RPM |
bodymap2_ovary | 0 .02 RPM | 49 .72 RPM |
bodymap2_prostate | 0 .00 RPM | 8 .28 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 0 .00 RPM |
bodymap2_testis | 0 .00 RPM | 19 .34 RPM |
bodymap2_thyroid | 0 .00 RPM | 10 .87 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 5 .18 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_1606 |
Pongo abelii | retro_pabe_1950 |
Callithrix jacchus | retro_cjac_1203 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000006898 | 1 retrocopy | |
Bos taurus | ENSBTAG00000013960 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000001570 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000003817 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000003319 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000004158 | 1 retrocopy | |
Homo sapiens | ENSG00000135069 | 3 retrocopies |
retro_hsap_2267 , retro_hsap_4054, retro_hsap_412,
|
Loxodonta africana | ENSLAFG00000017917 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000011868 | 2 retrocopies | |
Mustela putorius furo | ENSMPUG00000012566 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000002989 | 3 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000007765 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000019313 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000021045 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000013971 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000012946 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000000093 | 2 retrocopies |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |