RetrogeneDB ID:

retro_mputfur_808

Retrocopy
location
Organism:Ferret (Mustela putorius furo)
Coordinates:GL896950.1:9416390..9417556(+)
Located in intron of:ENSMPUG00000002154
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:PSAT1
Ensembl ID:ENSMPUG00000012566
Aliases:None
Description:phosphoserine aminotransferase 1 [Source:HGNC Symbol;Acc:19129]


Retrocopy-Parental alignment summary:






>retro_mputfur_808
CAAATACCAGCCACGCACGCTTCTCTCCGTTGTCCTTGTCGCCTACGCTGCCGCCCCATGAGCGCCCCGACGCAGGTGGT
CAACTTCGGGCCCGGGCCTGCCAAGCTACCGCGCTCGGTATTGTTAGAGAGCCAAAAAGAACTATTAGACTACAAAGGAA
CTGGGATTAGTGTTTTTGAAATGAGCCACAGATCGTCGGATTTTGCCAAGATTATTAACAACGCAGAGAATCTTGTGCGG
GAATTGTTAGCCATTCCAGATAACTACAAGGTGATTTTTGTGCAAAGAGGTGGGTCTGGCCAGTTCAGTGCTGTCCCCTT
AAACCTGATTGGCCGGAAAGCAGGAAGGTGTGCTGACTACGTGATAACTGGCTCTTGGTCAGCTAAGGCCGCAGAAGAAG
CCAAGAAGTTCGGGACTGTGAATATCGTCCACCCCAAACTTGGGAGTTACACGAAAATCCCAGATCCAAGCACCTGGAAC
CTCAGCCCGGACGCTTCCTATGTGTATTACTGCGCTAACGAGACCGTGCACGGAGTGGAGTTTGACTTTATCCCTGATGT
CAAGGGGGCAGTGCTGGTTTGCGACATGTCCTCAAACTTCCTCTCCAAGCCAGTGATGTTTCCAAGTTCGGCGTGATTTT
TGCCGGTGCACAGAAGAACGTGGGCTCTGCGGGGGTCACCGTAGTGATCATCCGCGAGGAACTGCTGGGGTTCGCGCTCC
GAGAGTGCCCCTTGATCCTGGAATACAAAGTACAGGCTGCAAACAGCTCCTTGTACAACACGCCCCCGTGCTTCAGCATC
TACGTCATGGGCTTGGTCCTGGAGTGGATTAAGAACAATGGCGGGGCCGCAGCCATGGAGAAGCTCAGCGCCATCAAATC
GCAGATGATTTATGATATTATTGATAATTCTCAAGGATTCTATGTATGTCCAGTGGAGCCCAAGTATAGAAGCAAGATGA
ATATTCCATTCCGCATTGGCAATGCCAAAGGAGACGATGCTTTAGAAAAAAGATTTCTTGATAAAGCTCTTGAACTCAAT
ATGATCTCCTTGAAAGGACATAGGTCTGTGGGAGGCATCCGGGCCTCTCTGTATAATGTTGTCACGATTGAGGATGTTCA
AAAGCTGGCGGCCTTCATGAAGAACTTTCTGGAGATGCATCAGCTA

ORF - retro_mputfur_808 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 96.67 %
Parental protein coverage: 95.81 %
Number of stop codons detected: 0
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalQTRAAHASLRCPCRLRCRTMSAPTQVVNFGPGPAKLPRSVLLEIQKELLDYKGIGISVLEMSHRSSDFAK
Q..A.HASLRCPCRLRCR.MSAPTQVVNFGPGPAKLPRSVLLE.QKELLDYKG.GISV.EMSHRSSDFAK
RetrocopyQIPATHASLRCPCRLRCRPMSAPTQVVNFGPGPAKLPRSVLLESQKELLDYKGTGISVFEMSHRSSDFAK
ParentalIINNAENLVRELLAIPDNYKVIFVQGGGSGQFSAVPLNLIGRKAGRCADYVVTGSWSAKAAEEAKKFGTV
IINNAENLVRELLAIPDNYKVIFVQ.GGSGQFSAVPLNLIGRKAGRCADYV.TGSWSAKAAEEAKKFGTV
RetrocopyIINNAENLVRELLAIPDNYKVIFVQRGGSGQFSAVPLNLIGRKAGRCADYVITGSWSAKAAEEAKKFGTV
ParentalNIVHPKLGSYTKIPDPSTWNLSPDASYVYYCANETVHGVEFDFIPDVKGAVLVCDMSSNFLSKPV-DVSK
NIVHPKLGSYTKIPDPSTWNLSPDASYVYYCANETVHGVEFDFIPDVKGAVLVCDMSSNFLSKPV.DVSK
RetrocopyNIVHPKLGSYTKIPDPSTWNLSPDASYVYYCANETVHGVEFDFIPDVKGAVLVCDMSSNFLSKPV<DVSK
ParentalFGVIFAGAQKNVGSAGVTVVIIREDLLGFALRECPSILEYKVQAANSSLYNTPPCFSIYVMGLVLEWIKN
FGVIFAGAQKNVGSAGVTVVIIRE.LLGFALRECP.ILEYKVQAANSSLYNTPPCFSIYVMGLVLEWIKN
RetrocopyFGVIFAGAQKNVGSAGVTVVIIREELLGFALRECPLILEYKVQAANSSLYNTPPCFSIYVMGLVLEWIKN
ParentalNGGAAAMEKLSAIKSQMIYDIIDNSQGFYVCPVEPKYRSKMNIPFRIGNAKGDDALEKRFLDKALELNMI
NGGAAAMEKLSAIKSQMIYDIIDNSQGFYVCPVEPKYRSKMNIPFRIGNAKGDDALEKRFLDKALELNMI
RetrocopyNGGAAAMEKLSAIKSQMIYDIIDNSQGFYVCPVEPKYRSKMNIPFRIGNAKGDDALEKRFLDKALELNMI
ParentalSLKGHRSVGGIRASLYNAVTIEDVQKLAAFMKNFLEMHQL
SLKGHRSVGGIRASLYN.VTIEDVQKLAAFMKNFLEMHQL
RetrocopySLKGHRSVGGIRASLYNVVTIEDVQKLAAFMKNFLEMHQL

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq - click to see more details

Mustela putorius furo was not studied using ChIP-Seq data.

EST - click to see more details

No EST(s) were mapped for retro_mputfur_808 retrocopy.

TSS - click to see more details

Mustela putorius furo was not studied using FANTOM5 data.

Lab - click to see more details

retro_mputfur_808 was not experimentally validated.

Retrocopy orthology:
Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.
Parental genes homology:
Parental genes homology involve 18 parental genes, and 28 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000068981 retrocopy
retro_amel_375,
Bos taurus ENSBTAG000000139601 retrocopy
retro_btau_1658,
Canis familiaris ENSCAFG000000015701 retrocopy
retro_cfam_269,
Choloepus hoffmanni ENSCHOG000000038171 retrocopy
retro_chof_2702,
Callithrix jacchus ENSCJAG000000033191 retrocopy
retro_cjac_1203,
Echinops telfairi ENSETEG000000041581 retrocopy
retro_etel_99,
Homo sapiens ENSG000001350693 retrocopies
retro_hsap_2267, retro_hsap_4054, retro_hsap_412,
Gorilla gorilla ENSGGOG000000154801 retrocopy
retro_ggor_407,
Loxodonta africana ENSLAFG000000179172 retrocopies
retro_lafr_1249, retro_lafr_660,
Macaca mulatta ENSMMUG000000118682 retrocopies
retro_mmul_1029, retro_mmul_2341,
Mustela putorius furoENSMPUG00000012566 1 retrocopy
retro_mputfur_808 ,
Nomascus leucogenys ENSNLEG000000029893 retrocopies
retro_nleu_1010, retro_nleu_1288, retro_nleu_2805,
Oryctolagus cuniculus ENSOCUG000000077651 retrocopy
retro_ocun_1092,
Pongo abelii ENSPPYG000000193133 retrocopies
retro_pabe_1950, retro_pabe_308, retro_pabe_3328,
Pan troglodytes ENSPTRG000000210452 retrocopies
retro_ptro_1606, retro_ptro_316,
Rattus norvegicus ENSRNOG000000139711 retrocopy
retro_rnor_1663,
Tupaia belangeri ENSTBEG000000129461 retrocopy
retro_tbel_1577,
Tarsius syrichta ENSTSYG000000000932 retrocopies
retro_tsyr_1073, retro_tsyr_1212,


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