RetrogeneDB ID: | retro_pabe_3328 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 8:51301328..51302093(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PSAT1 | ||
Ensembl ID: | ENSPPYG00000019313 | ||
Aliases: | None | ||
Description: | phosphoserine aminotransferase 1 [Source:HGNC Symbol;Acc:19129] |
Percent Identity: | 87.84 % |
Parental protein coverage: | 61.45 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | KKFGTINIVHPKLGSYTKIPDPSTWNLNPDASYVYYCANETVHGVEFDFIPDVKGAVLVCDMSSNFLSKP |
KK.GTINIVH.KLGSYT.IPDPS.WNLNPDASYVYYCAN.TVHGVEF.FIPDVKGAVLVCDM.SNFLSKP | |
Retrocopy | KKPGTINIVHSKLGSYTEIPDPSIWNLNPDASYVYYCANGTVHGVEFHFIPDVKGAVLVCDMFSNFLSKP |
Parental | VDVSKFGVIFAGAQKNVGSAGVTVVIVRDDLLGFALRECPSVLEYKVQAGNSSLYNTPPCFSIYVMGLVL |
VDVSKF.VIF.GAQKNVGSAGVTVVIVRDD.LG.ALRE.PSVLE.KVQAGNSS.YNTPPCFSIY.MGLVL | |
Retrocopy | VDVSKFDVIFSGAQKNVGSAGVTVVIVRDDQLGLALREFPSVLECKVQAGNSSSYNTPPCFSIYIMGLVL |
Parental | EWIKNNGGATAMEKLSSTKSQTIYEIIDNSQGFYVCPVEPQNRSKMNIPFRIGNAKGDDALEKRFLDKAL |
EWIKNNGGA.AMEKLSS.KSQ.IYEI.DNSQGFYVCPV..QNRSKMNIPF..GN.KGDDAL.KRFLDKA. | |
Retrocopy | EWIKNNGGAAAMEKLSSIKSQMIYEITDNSQGFYVCPV*TQNRSKMNIPFCFGNVKGDDALVKRFLDKAF |
Parental | ELNMLSLKGHRSVGGIRASLYNAVTIEDVQKLAAFMKKFLEMHQL |
ELNMLSLKGHRSVGGI.ASLYN.VTIEDVQ.LAAFMKK.LEM.QL | |
Retrocopy | ELNMLSLKGHRSVGGIQASLYNSVTIEDVQELAAFMKKSLEMRQL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 12 .88 RPM |
SRP007412_cerebellum | 0 .00 RPM | 10 .21 RPM |
SRP007412_heart | 0 .00 RPM | 0 .33 RPM |
SRP007412_kidney | 0 .03 RPM | 74 .61 RPM |
SRP007412_liver | 0 .00 RPM | 29 .50 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_4054 |
Macaca mulatta | retro_mmul_2341 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000006898 | 1 retrocopy | |
Bos taurus | ENSBTAG00000013960 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000001570 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000003817 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000003319 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000004158 | 1 retrocopy | |
Homo sapiens | ENSG00000135069 | 3 retrocopies | |
Loxodonta africana | ENSLAFG00000017917 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000011868 | 2 retrocopies | |
Mustela putorius furo | ENSMPUG00000012566 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000002989 | 3 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000007765 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000019313 | 3 retrocopies |
retro_pabe_1950, retro_pabe_308, retro_pabe_3328 ,
|
Pan troglodytes | ENSPTRG00000021045 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000013971 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000012946 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000000093 | 2 retrocopies |