RetrogeneDB ID: | retro_lafr_660 | ||
Retrocopylocation | Organism: | Elephant (Loxodonta africana) | |
Coordinates: | scaffold_3:25562476..25563112(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PSAT1 | ||
Ensembl ID: | ENSLAFG00000017917 | ||
Aliases: | None | ||
Description: | Phosphoserine aminotransferase [Source:UniProtKB/TrEMBL;Acc:G3TJT4] |
Percent Identity: | 78.3 % |
Parental protein coverage: | 57.3 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | HGVEFDFIPDVKGAVLVCDMSSNFLSKPVDVSKFGVIFAGAQKNVGSAGVTVVIVRDDLLGFALQECPSI |
HG.EF.FIP.VK.AVLVCDM.SNFLSKPV.VS.FGVIFAG.QKN..SAGVTVVI..DDLL.FAL.ECPS. | |
Retrocopy | HGLEFNFIPGVKAAVLVCDMASNFLSKPVGVSTFGVIFAGTQKNIDSAGVTVVIIHDDLLEFAL*ECPSV |
Parental | LEYKVQAGNNSLYNTPPCFSIYVMGLVLEWIKNNGGAAAMEKLSSIKSEMIYDIIDNSQGFYVCPVEPQN |
LEYKV.A.NNS.YNTPPCFSI.VMGLVLEWIKN.G.A..ME.L.S.KS.M.YDIIDNSQGF.VCPVEPQN | |
Retrocopy | LEYKVRARNNSVYNTPPCFSICVMGLVLEWIKNYGSAIVMEQLGSVKSQMVYDIIDNSQGFCVCPVEPQN |
Parental | RSKMNIPFRIGNAKGDDALEKRFVDKALELNMLSLKGHRSVGGIRASLYNAVTIEDVQKLAAFMKNFLEM |
RSKMNIPF.IGN.KGD.ALEKRF..KALE.N..SLKGHR.V.GI.ASLYN.VTIEDVQ.L.AFM.N.LEM | |
Retrocopy | RSKMNIPFHIGNTKGDNALEKRFLSKALEHNVMSLKGHRPVAGIHASLYNSVTIEDVQMLEAFMRNVLEM |
Parental | HQ |
H. | |
Retrocopy | HR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000006898 | 1 retrocopy | |
Bos taurus | ENSBTAG00000013960 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000001570 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000003817 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000003319 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000004158 | 1 retrocopy | |
Homo sapiens | ENSG00000135069 | 3 retrocopies | |
Gorilla gorilla | ENSGGOG00000015480 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000017917 | 2 retrocopies |
retro_lafr_1249, retro_lafr_660 ,
|
Macaca mulatta | ENSMMUG00000011868 | 2 retrocopies | |
Mustela putorius furo | ENSMPUG00000012566 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000002989 | 3 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000007765 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000019313 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000021045 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000013971 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000012946 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000000093 | 2 retrocopies |