Parental gene: | ENSCJAG00000008364 |
| Aliases: | None |
| Description: | None |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 18:9338633..9350793(+) |
>ENSCJAG00000008364
ATGCCCTTGTCCCGCTGGTTGAGATCTGTGGGGGTCTTCCTGCTGCCAGCCCCCTACTGGGCACCCCGGGAGAGGTGGCT
GGGTTCCCTACGGCGGCCCTCCTTGGTGGTCGGGTACCCAGTCCTGGCCTGGCACAGTGCCCGCTGCTGGTGCCAAGCAT
GGACAGAGGAGCCTCGAGCCCTTTGCTCCTCCCTCAGAATGAATGGAGACCAGAAATCAGATGTTTATGCCCAAGAAAAG
CAGGATTTCGTTCAGCACTTCTCCCAGATCGTTAGGGTGCTGACTGAGGATGAGATGGGGCACCCAGAGACAGGAGATGC
TATTGCCCGGCTCAAGGAGGTCCTGGAGTACAACGCCATTGGAGGCAAGTATCACCGGGGTCTGACGGTGCTAGTAGCGT
TCCGGGAGCTGGCGGAGCCAAGGAAACAGGATGCTGATAGTCTCCAGCGGGCCCTGACGGTGGGCTGGTGTGTGGAACTG
CTGCAAGCTTTCTTCCTGGTGACAGATGACATCATGGATTCATCCCTCACCCGCCGGGGACAGATCTGCTGGTATCAGAA
GCCAGGTGTGGGTCTGGATGCCATCAATGACGCTGTCCTTCTGGAAGCGTGTGTCTACCGCCTGCTGAAGCTCTACTGCC
GGGAGCAGCCCTATTACCTGAACCTGATCGAGCTCTTCCTGCAGAGTTCCTATCAGACTGAGATTGGGCAGACCCTGGAC
CTCATCACAGCCCCTCAGGACAATGTGGATCTCGACAGATTCACTGAAAAGAGGTACAAATCCATTGTCAAGTACAAGAC
GGCTTTCTACTCCTTCTACCTTCCTGTAGCTGCAGCCATGTACATGGCAGGAATTGATGGCGAGAAGGAGCATGCCAATG
CCAAGAAGATCCTGCTGGAGATGGGAGAGTTCTTTCAGATTCAGGATGATTACCTTGACCTCTTTGGGGACCCCAGTGTG
ACTGGCAAAGTTGGCACTGACATCCAGGACAACAAATGCAGCTGGCTCGTGGTCCAGTGTCTGCAACGGTCCACTCCGGA
ACAGCGCCAGATCCTGAAGGAAAATTACGGGCAGAAGGAGGCTGAGAAGGTGGCCAGAGTGAAGGCATTATATGAGGAGC
TGGATCTGCCGGCTGTGTTCTCGAAGTATGAGGAAGACAGTTACAACCACATTATGGCTCTGATTGAACAGTACGCAGCG
CCCCTGCCCCCAGCTATCTTTCTGGGGCTTGCGCGCAAAATCTACAAGCGGAAAAAGTGA
ATGCCCTTGTCCCGCTGGTTGAGATCTGTGGGGGTCTTCCTGCTGCCAGCCCCCTACTGGGCACCCCGGGAGAGGTGGCT
GGGTTCCCTACGGCGGCCCTCCTTGGTGGTCGGGTACCCAGTCCTGGCCTGGCACAGTGCCCGCTGCTGGTGCCAAGCAT
GGACAGAGGAGCCTCGAGCCCTTTGCTCCTCCCTCAGAATGAATGGAGACCAGAAATCAGATGTTTATGCCCAAGAAAAG
CAGGATTTCGTTCAGCACTTCTCCCAGATCGTTAGGGTGCTGACTGAGGATGAGATGGGGCACCCAGAGACAGGAGATGC
TATTGCCCGGCTCAAGGAGGTCCTGGAGTACAACGCCATTGGAGGCAAGTATCACCGGGGTCTGACGGTGCTAGTAGCGT
TCCGGGAGCTGGCGGAGCCAAGGAAACAGGATGCTGATAGTCTCCAGCGGGCCCTGACGGTGGGCTGGTGTGTGGAACTG
CTGCAAGCTTTCTTCCTGGTGACAGATGACATCATGGATTCATCCCTCACCCGCCGGGGACAGATCTGCTGGTATCAGAA
GCCAGGTGTGGGTCTGGATGCCATCAATGACGCTGTCCTTCTGGAAGCGTGTGTCTACCGCCTGCTGAAGCTCTACTGCC
GGGAGCAGCCCTATTACCTGAACCTGATCGAGCTCTTCCTGCAGAGTTCCTATCAGACTGAGATTGGGCAGACCCTGGAC
CTCATCACAGCCCCTCAGGACAATGTGGATCTCGACAGATTCACTGAAAAGAGGTACAAATCCATTGTCAAGTACAAGAC
GGCTTTCTACTCCTTCTACCTTCCTGTAGCTGCAGCCATGTACATGGCAGGAATTGATGGCGAGAAGGAGCATGCCAATG
CCAAGAAGATCCTGCTGGAGATGGGAGAGTTCTTTCAGATTCAGGATGATTACCTTGACCTCTTTGGGGACCCCAGTGTG
ACTGGCAAAGTTGGCACTGACATCCAGGACAACAAATGCAGCTGGCTCGTGGTCCAGTGTCTGCAACGGTCCACTCCGGA
ACAGCGCCAGATCCTGAAGGAAAATTACGGGCAGAAGGAGGCTGAGAAGGTGGCCAGAGTGAAGGCATTATATGAGGAGC
TGGATCTGCCGGCTGTGTTCTCGAAGTATGAGGAAGACAGTTACAACCACATTATGGCTCTGATTGAACAGTACGCAGCG
CCCCTGCCCCCAGCTATCTTTCTGGGGCTTGCGCGCAAAATCTACAAGCGGAAAAAGTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 6 .70 RPM |
| SRP051959_skeletal_muscle | 5 .57 RPM |
| SRP051959_lymph_node | 11 .07 RPM |
| SRP051959_lung | 8 .85 RPM |
| SRP051959_liver | 106 .46 RPM |
| SRP051959_kidney | 7 .57 RPM |
| SRP051959_heart | 5 .24 RPM |
| SRP051959_colon | 23 .47 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Canis familiaris | ENSCAFG00000030749 | possible_ortholog | 2 retrogenes | |
| Echinops telfairi | ENSETEG00000001154 | ortholog_one2many | 6 retrogenes | |
| Homo sapiens | ENSG00000160752 | ortholog_one2many | 6 retrogenes | |
| Microcebus murinus | ENSMICG00000007468 | ortholog_one2many | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000023144 | ortholog_many2many | 3 retrogenes | |
| Mus musculus | ENSMUSG00000059743 | possible_ortholog | 5 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000012099 | ortholog_one2many | 6 retrogenes | |
| Pongo abelii | ENSPPYG00000000747 | ortholog_many2many | 3 retrogenes | |
| Pan troglodytes | ENSPTRG00000001422 | ortholog_one2many | 9 retrogenes | |
| Rattus norvegicus | ENSRNOG00000043377 | possible_ortholog | 3 retrogenes | |
| Ictidomys tridecemlineatus | ENSSTOG00000004475 | ortholog_many2many | 1 retrogene | |
| Tursiops truncatus | ENSTTRG00000013326 | possible_ortholog | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_44 | 89.24 | 100.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cjac_70 | 97.45 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_cjac_157 | 99.43 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_cjac_299 | 98.02 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_cjac_1066 | 88.67 | 86.16 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_cjac_1217 | 95.03 | 86.16 | Please wait, loading | Please wait, loading | Please wait, loading |
| 7. | retro_cjac_1395 | 84.73 | 78.52 | Please wait, loading | Please wait, loading | Please wait, loading |
| 8. | retro_cjac_2011 | 90.33 | 85.92 | Please wait, loading | Please wait, loading | Please wait, loading |
| 9. | retro_cjac_2081 | 92.84 | 86.16 | Please wait, loading | Please wait, loading | Please wait, loading |
| 10. | retro_cjac_2161 | 84.57 | 86.16 | Please wait, loading | Please wait, loading | Please wait, loading |
| 11. | retro_cjac_4154 | 88.46 | 86.16 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000008364 retrocopies