Parental gene: | FDPS, ENSETEG00000001154 |
| Aliases: | None |
| Description: | farnesyl diphosphate synthase [Source:HGNC Symbol;Acc:3631] |
| Organism: | Lesser hedgehog tenrec (Echinops telfairi) |
| Coordinates: | GeneScaffold_6626:199832..205616(+) |
>ENSETEG00000001154
ATGCCTCCGTCCCGCTGGCTGAGCTCTATGGGGGCCTTCCTGCTGCCAGGCCCCTGCTGGGTGCCCCAGGTGAGGTGCCT
TCGAGTCCCAAGGCAGCCCTCCCTGGTGCAAGGGTGCCCAGTCCTGGGGGCCAGGCGCAGTGCCCGCCGCTGGGGCCAAG
CGTGGATAGAGGAGCCTCGAGCATTTTGCTCCTCTCTCAGAATGAATGGAGACCAGAAAGTGGACGCTTACGCCCAAGAA
AAGGAGAATTTCATCCAGCATTTCTCCCATGTGCTCAAAGTGCTGGTCGAGGATGACCTGGGGCACCCAGAGACGGGAGA
CGCTGTTGCCCGGCTCAAGAAGGTCCTGGAATACAATGTCATCGGAGGCAAATACAACCGAGGTATGACGGTGGTAGCTG
TGTTCCAGGCGCTGGCGGAGCCCGGGCAGCAGGATGCTGACAGTCTGCAGCGGGCGCTGACCGTGGGCTGGTGTGTGGAG
TTGCTCCAAGCTTTCCTCCTGATACTGGATGACATAATGGATTCATCCCTCACCCGCCGGGGGCAGCCCTGCTGGTACCA
GAAGCCAGGCATAGGTCTGGATGCCATCAATGACGCCATGCTGCTGGAATCCTCTATCTACCGCCTGTTGAAGTTCTACT
GCCGGGGGCAGCCCTACTACCTGAACCTGATGGAGCTCTTCCTGGAGAGTTCCTATCAGACTGAGATAGGACAGACCCTG
GACCTCATCACTGCCCCTCAGGGCAACGTGGATCTCAGCAGATTTACCCCAAAGAGGTACAAATCCATTGTCAAGTACAA
GACCTCGTTCTACTCCTTTTACCACCCCGTCGCTGCTGCCATGTACATGGCGGGCATTGACGGGGAGAAGGAGCATGCCG
ATGCCAAGCGGATCCTGCTGGAGATGGGCGAGTACTTTCAGATCCAGGATGATTATCTGGACCTCTTTGGTGACCCCAGT
GTGACAGGCAAGGTTGGCACTGACATCCAGGACAACAAATGCAGCTGGCTGGTGGTTCAGTGTCTGCAGCGGGCCTCTCC
GGAGCAGCGTCGGGTCCTGCAG
ATGCCTCCGTCCCGCTGGCTGAGCTCTATGGGGGCCTTCCTGCTGCCAGGCCCCTGCTGGGTGCCCCAGGTGAGGTGCCT
TCGAGTCCCAAGGCAGCCCTCCCTGGTGCAAGGGTGCCCAGTCCTGGGGGCCAGGCGCAGTGCCCGCCGCTGGGGCCAAG
CGTGGATAGAGGAGCCTCGAGCATTTTGCTCCTCTCTCAGAATGAATGGAGACCAGAAAGTGGACGCTTACGCCCAAGAA
AAGGAGAATTTCATCCAGCATTTCTCCCATGTGCTCAAAGTGCTGGTCGAGGATGACCTGGGGCACCCAGAGACGGGAGA
CGCTGTTGCCCGGCTCAAGAAGGTCCTGGAATACAATGTCATCGGAGGCAAATACAACCGAGGTATGACGGTGGTAGCTG
TGTTCCAGGCGCTGGCGGAGCCCGGGCAGCAGGATGCTGACAGTCTGCAGCGGGCGCTGACCGTGGGCTGGTGTGTGGAG
TTGCTCCAAGCTTTCCTCCTGATACTGGATGACATAATGGATTCATCCCTCACCCGCCGGGGGCAGCCCTGCTGGTACCA
GAAGCCAGGCATAGGTCTGGATGCCATCAATGACGCCATGCTGCTGGAATCCTCTATCTACCGCCTGTTGAAGTTCTACT
GCCGGGGGCAGCCCTACTACCTGAACCTGATGGAGCTCTTCCTGGAGAGTTCCTATCAGACTGAGATAGGACAGACCCTG
GACCTCATCACTGCCCCTCAGGGCAACGTGGATCTCAGCAGATTTACCCCAAAGAGGTACAAATCCATTGTCAAGTACAA
GACCTCGTTCTACTCCTTTTACCACCCCGTCGCTGCTGCCATGTACATGGCGGGCATTGACGGGGAGAAGGAGCATGCCG
ATGCCAAGCGGATCCTGCTGGAGATGGGCGAGTACTTTCAGATCCAGGATGATTATCTGGACCTCTTTGGTGACCCCAGT
GTGACAGGCAAGGTTGGCACTGACATCCAGGACAACAAATGCAGCTGGCTGGTGGTTCAGTGTCTGCAGCGGGCCTCTCC
GGAGCAGCGTCGGGTCCTGCAG
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Canis familiaris | ENSCAFG00000030749 | ortholog_one2one | 2 retrogenes | |
| Callithrix jacchus | ENSCJAG00000008364 | ortholog_one2many | 11 retrogenes | |
| Homo sapiens | ENSG00000160752 | ortholog_one2one | 6 retrogenes | |
| Microcebus murinus | ENSMICG00000007468 | ortholog_one2one | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000023144 | ortholog_one2many | 3 retrogenes | |
| Mus musculus | ENSMUSG00000059743 | ortholog_one2one | 5 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000012099 | ortholog_one2one | 6 retrogenes | |
| Pongo abelii | ENSPPYG00000000747 | ortholog_one2many | 3 retrogenes | |
| Pan troglodytes | ENSPTRG00000001422 | ortholog_one2one | 9 retrogenes | |
| Rattus norvegicus | ENSRNOG00000043377 | ortholog_one2many | 3 retrogenes | |
| Ictidomys tridecemlineatus | ENSSTOG00000004475 | ortholog_one2many | 1 retrogene | |
| Tursiops truncatus | ENSTTRG00000013326 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_etel_730 | 87.21 | 83.33 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_etel_743 | 89.60 | 56.78 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_etel_990 | 84.71 | 67.80 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_etel_1770 | 85.27 | 72.32 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_etel_1818 | 78.28 | 62.43 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_etel_2179 | 61.60 | 69.77 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSETEG00000001154 retrocopies