Parental gene:

FDPS, ENSPPYG00000000747

Aliases:None
Description:farnesyl pyrophosphate synthase [Source:RefSeq peptide;Acc:NP_001125620]
Organism:Orangutan (Pongo abelii)
Coordinates:1:96204151..96216061(-)


>ENSPPYG00000000747
CAGGAATCAGCATCTGGGAACAGGGAGTGCTTGGTGCCCCCTCCCTATGCCACTCCCAGGATGCCCCTGTCCCGCTGGTT
GAGATCTGTGGGGGTCTTCCTGCTGCCAGCCCCCTACTGGGCACCCCGGGAGAGGTGGCTGGGTTCCCTACGGCGGCCCT
CCCTGGTGCACGGGTACCCAGTCCTGGCCTGGCACAGTGCCCGCTGCTGGTGCCAAGCGTGGACAGAGGAACCTCGAGCC
CTTTGCTCCTCTCTCAGAATGAACGGAGACCAGAAATCAGATGTTTATGCCCAAGAAAAGCAGGATTTTGTTCAGCACTT
CTCCCAGATCGTTAGGATGCTGACTGAGGATGAGATGGGGCACCCAGAGACAGGAGATGCTATTGCCCGGCTCAAGGAGG
TCCTGGAGTACAATGCCATTGGAGGCAAGTATCACCGGGGTTTGACGGTGGTAGTAGCATTCCGGGAGCTGGTGCAGCCA
AGGAAACAGGATGCTGATAGTCTCCAGCGGGCCCGGACTGTGGGCTGGTGTGTGGAACTGGTGTTCTTCCTGGTGGCAGA
TGACATCATGGATTCATCCCTCACCCGCCGGGGACAGATCTGCTGGTATCAGAAGCCAGGCGTGGGTTTGGATGCCATCA
ATGATGCTAACCTCCTGGAAGCATGTATCTACCGCCTGCTGAAGCTCTATTGCCGGGAGCAGCCCTATTACCTGAACCTG
ATTGAGCTCTTCCTGCAGAGTTCCTATCAGACTGAGATTGGGCAGACTCTGGACCTCATCACAGCCCCCCAGGGCAATGT
GGATCTTGTCAGATTCACTGAAAAGAGGTACAAATCTATTGTCAAGTACAAGACAGCTTTCTACTCCTTCTACCTTCCTA
TAGCTGCAGCCATGTACATGGCAGGAATTGATGGCGAGAAGGAGCATGCCAATGCCAAGAAGATCCTGCTGGAGATGGGG
GAGTTCTTTCAGATTCAGGATGATTACCTTGACCTCTTTGGGGACCCCAGTGTGACCGGCAAAATTGGCACTGACATCCA
GGACAACAAATGCAGCTGGCTGGTGGTTCAGTGTCTGCAACGGGCCACTCCAGAACAGTACCAGATCCTGAAGGAAAATT
ACGGGCAGAAGGAGGCTGAGAAAGTGGCCCGGGTGAAGGCGCTATATGAGGAGCTGGATCTGCCGGCTGTGTTCTTGCAA
TATGAGGAAGACAGTTACAGCCACATTATGGCTCTCATTGAACAGTACGCAGCACCCCTGCCCCCAGCCATCTTTCTGGG
GCTTGCGCGCAAAATCTACAAGCGGAGAAAGTGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 44 .23 RPM
SRP007412_cerebellum 34 .53 RPM
SRP007412_heart 10 .08 RPM
SRP007412_kidney 36 .16 RPM
SRP007412_liver 75 .10 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000030749 possible_ortholog 2 retrogenes
retro_cfam_1822, retro_cfam_1888,
Callithrix jacchus ENSCJAG00000008364 ortholog_many2many 11 retrogenes
retro_cjac_1066, retro_cjac_1217, retro_cjac_1395, retro_cjac_157, retro_cjac_2011, retro_cjac_2081, retro_cjac_2161, retro_cjac_299, retro_cjac_4154, retro_cjac_44, retro_cjac_70,
Echinops telfairi ENSETEG00000001154 ortholog_one2many 6 retrogenes
retro_etel_1770, retro_etel_1818, retro_etel_2179, retro_etel_730, retro_etel_743, retro_etel_990,
Homo sapiens ENSG00000160752 ortholog_one2one 6 retrogenes
retro_hsap_1519, retro_hsap_1558, retro_hsap_1560, retro_hsap_3871, retro_hsap_3872, retro_hsap_502,
Microcebus murinus ENSMICG00000007468 ortholog_one2many 1 retrogene
retro_mmur_1148,
Macaca mulatta ENSMMUG00000023144 ortholog_one2one 3 retrogenes
retro_mmul_1190, retro_mmul_2152, retro_mmul_565,
Mus musculus ENSMUSG00000059743 possible_ortholog 5 retrogenes
retro_mmus_1028, retro_mmus_1552, retro_mmus_2802, retro_mmus_3625, retro_mmus_590,
Nomascus leucogenys ENSNLEG00000012099 ortholog_one2one 6 retrogenes
retro_nleu_1486, retro_nleu_1727, retro_nleu_2301, retro_nleu_2405, retro_nleu_2595, retro_nleu_2692,
Pan troglodytes ENSPTRG00000001422 ortholog_one2one 9 retrogenes
retro_ptro_1028, retro_ptro_1048, retro_ptro_1049, retro_ptro_2637, retro_ptro_2638, retro_ptro_2639, retro_ptro_2940, retro_ptro_2995, retro_ptro_377,
Rattus norvegicus ENSRNOG00000043377 possible_ortholog 3 retrogenes
retro_rnor_1175, retro_rnor_153, retro_rnor_2897,
Ictidomys tridecemlineatus ENSSTOG00000004475 ortholog_many2many 1 retrogene
retro_itri_488,
Tursiops truncatus ENSTTRG00000013326 possible_ortholog 1 retrogene
retro_ttru_689,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_235 84.57 82.15
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2. retro_pabe_1290 79.84 81.92
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3. retro_pabe_1329 82.24 83.07
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Download FASTA sequences of all ENSPPYG00000000747 retrocopies