RetrogeneDB ID: | retro_etel_2179 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_90855:3..732(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | FDPS | ||
Ensembl ID: | ENSETEG00000001154 | ||
Aliases: | None | ||
Description: | farnesyl diphosphate synthase [Source:HGNC Symbol;Acc:3631] |
Percent Identity: | 61.6 % |
Parental protein coverage: | 69.77 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | EPRAFCSSLRMNGDQKVDAYAQEKENFIQHFSHVLKVLVEDDL-GHPETGDAVARLKKVLEYNVIGGKYN |
...A..S.L..NGD.K.DA.AQEK.NF.QHFS..LKVL.ED.L.G.P..G....RLKKVLEY....GKYN | |
Retrocopy | QDQARSSILEQNGDKKADAHAQEKQNFLQHFSQILKVLAEDEL<GTPRDGRY--RLKKVLEYSDLEGKYN |
Parental | RGMTVVAVFQALAEPGQQDADSLQRALTVGWCVELLQAFLLILDDIMDSSLTRRGQPCWYQKPGIGLDAI |
.G....AVFQ.LAEP..QDA..LQ.ALT..WCVE.L..FLL.L.DI.DSSLT..GQPCW...PG.GLDAI | |
Retrocopy | PGLRMLAVFQELAEPRKQDAEGLQWALTMDWCVEML*GFLLVLEDIVDSSLTCQGQPCWFEMPGRGLDAI |
Parental | NDAMLLESSIYRLLKFYCRGQPYYLNLMELFL-ESSYQTEIGQTLDLITAPQGNVDLSRFTPKRYKSIVK |
.DAMLLES.IY.LLK..CR..P.YL.L.EL.L.E.SY..E.GQ.LDLIT...GNVDL..FT...Y...VK | |
Retrocopy | EDAMLLESCIYCLLKLHCR-EPCYLDLLELSL<EGSYHAETGQALDLITVSHGNVDLGPFTEEMYTFMVK |
Parental | YKTSFYSFYHPVAAAMYMAGIDGEKEHADAKRI-LLEMGE |
.KT.FYSF..PV.AAM...G.DGE.EHA..KRI.LLE.GE | |
Retrocopy | DKTVFYSFCLPVVAAMSLVGTDGETEHANPKRI<LLETGE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000030749 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000008364 | 11 retrocopies | |
Echinops telfairi | ENSETEG00000001154 | 6 retrocopies | |
Homo sapiens | ENSG00000160752 | 6 retrocopies | |
Microcebus murinus | ENSMICG00000007468 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000023144 | 3 retrocopies | |
Mus musculus | ENSMUSG00000059743 | 5 retrocopies | |
Nomascus leucogenys | ENSNLEG00000012099 | 6 retrocopies | |
Pongo abelii | ENSPPYG00000000747 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000001422 | 9 retrocopies | |
Rattus norvegicus | ENSRNOG00000043377 | 3 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000004475 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000013326 | 1 retrocopy |