RetrogeneDB ID: | retro_cjac_2011 | ||
Retrocopylocation | Organism: | Marmoset (Callithrix jacchus) | |
Coordinates: | 20:25232224..25233302(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCJAG00000008364 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 90.33 % |
Parental protein coverage: | 85.92 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | ALCSSLRMNGDQKSDVYAQEKQDFVQHFSQIVRVLTEDEMGHPETGDAIARLKEVLEYNAIGGKYHRGLT |
ALCSSLRMNGDQKSDVYAQEKQDF.QHFSQIVR.LTEDEMGHPETGDA.A.LKEVLEYNAIGGKYHRGLT | |
Retrocopy | ALCSSLRMNGDQKSDVYAQEKQDFIQHFSQIVRMLTEDEMGHPETGDATAWLKEVLEYNAIGGKYHRGLT |
Parental | VLVAFRELAEPRKQDADSLQRALTVGWCVELLQAFFLVTDDIMDSSLTRRG-QICWYQKPGVGLDAINDA |
VL.AFREL.EPRKQDADSLQ.ALTVGWCVELLQAFFLV.DDIMDS.LTRRG..ICWYQKPGVGLDAI.DA | |
Retrocopy | VLSAFRELVEPRKQDADSLQWALTVGWCVELLQAFFLVADDIMDSYLTRRG<MICWYQKPGVGLDAISDA |
Parental | VLLEACVYRLLKLYCREQPYYLNLIELFLQSSYQTEIGQTLDLITAPQDNVDLDRFTEKRYKSIVKYKTA |
.LL.AC.Y..LKLYCR.QPYYLNLIELFLQSS.QTEIGQT.DLITAPQ.NVDL.RFTEKRYKSIVKYKTA | |
Retrocopy | ILLQACIYHPLKLYCRVQPYYLNLIELFLQSS*QTEIGQTPDLITAPQGNVDLGRFTEKRYKSIVKYKTA |
Parental | FYSFYLPVAAAMYMAGIDGEKEHANAKKILLEMGEFFQIQDDYLDLFGDPSVTGKVGTDIQDNKCSWLVV |
FYSFYLPVAAAMYMAGIDGEKE.ANAKKILLEMGEFFQIQDDYLDLFGDPSVT.KVGTDIQDNKCSWL.V | |
Retrocopy | FYSFYLPVAAAMYMAGIDGEKEQANAKKILLEMGEFFQIQDDYLDLFGDPSVTRKVGTDIQDNKCSWLMV |
Parental | QCLQRSTPEQRQILKENYGQKEAEKVARVKALYEELDLPAVFSKYEEDSYNHIMALIEQYAAPLP-PAIF |
QCLQRST.EQ.QILKENYGQKEAEKVARV.ALYE.LDLPAVF.KYEEDS.NHIM.L.EQYAAPLP.PAIF | |
Retrocopy | QCLQRSTLEQCQILKENYGQKEAEKVARVEALYEKLDLPAVFLKYEEDSQNHIMGLTEQYAAPLP<PAIF |
Parental | LGLARKIYKRKK |
LGLARKIYK.KK | |
Retrocopy | LGLARKIYKQKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP051959_colon | 0 .49 RPM | 23 .47 RPM |
SRP051959_heart | 1 .84 RPM | 5 .24 RPM |
SRP051959_kidney | 1 .13 RPM | 7 .57 RPM |
SRP051959_liver | 1 .69 RPM | 106 .46 RPM |
SRP051959_lung | 1 .48 RPM | 8 .85 RPM |
SRP051959_lymph_node | 0 .27 RPM | 11 .07 RPM |
SRP051959_skeletal_muscle | 1 .90 RPM | 5 .57 RPM |
SRP051959_spleen | 1 .34 RPM | 6 .70 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000030749 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000008364 | 11 retrocopies |
retro_cjac_1066, retro_cjac_1217, retro_cjac_1395, retro_cjac_157, retro_cjac_2011 , retro_cjac_2081, retro_cjac_2161, retro_cjac_299, retro_cjac_4154, retro_cjac_44, retro_cjac_70,
|
Echinops telfairi | ENSETEG00000001154 | 6 retrocopies | |
Homo sapiens | ENSG00000160752 | 6 retrocopies | |
Microcebus murinus | ENSMICG00000007468 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000023144 | 3 retrocopies | |
Mus musculus | ENSMUSG00000059743 | 5 retrocopies | |
Nomascus leucogenys | ENSNLEG00000012099 | 6 retrocopies | |
Pongo abelii | ENSPPYG00000000747 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000001422 | 9 retrocopies | |
Rattus norvegicus | ENSRNOG00000043377 | 3 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000004475 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000013326 | 1 retrocopy |