RetrogeneDB ID: | retro_etel_743 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_157791:5333..5937(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSETEG00000005838 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | FDPS | ||
Ensembl ID: | ENSETEG00000001154 | ||
Aliases: | None | ||
Description: | farnesyl diphosphate synthase [Source:HGNC Symbol;Acc:3631] |
Percent Identity: | 89.6 % |
Parental protein coverage: | 56.78 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | TVGWCVELLQAFLLILDDIMDSSLTRRGQPCWYQKPGIGL-DAINDAMLLESSIYRLLKFYCRGQPYYLN |
TVGW.V.LLQAFLLILDDIMDSS.TRRGQPCWYQKPGIGL..AI.DAMLLESSIY.L.K..C.GQP.YL. | |
Retrocopy | TVGWSVKLLQAFLLILDDIMDSSPTRRGQPCWYQKPGIGL>HAISDAMLLESSIYCLVKLHCQGQPHYLH |
Parental | LMELFLESSYQTEIGQTLDLITAPQGNVDLSRFTPKRYKSIVKYKTSFYSFYHPVAAAMYMAGIDGEKEH |
L.ELF.ESSYQTEIGQTLDL.TAPQGN.DLSRFTPKRYKSIVKY.TSFYSFYH.VAAAM.M.GIDGEKEH | |
Retrocopy | LLELFRESSYQTEIGQTLDLSTAPQGNADLSRFTPKRYKSIVKYQTSFYSFYHSVAAAMCMEGIDGEKEH |
Parental | ADAKRILLEMGEYFQIQDDYLDLFGDPSVTGKVGTDIQDNKCSWLVVQCLQRASPEQRRVLQ |
ADAKRILLEMGEYFQIQDDYLDLFGDPSVTGKVGTDIQDNKCSWLVVQCLQRASPEQRRVLQ | |
Retrocopy | ADAKRILLEMGEYFQIQDDYLDLFGDPSVTGKVGTDIQDNKCSWLVVQCLQRASPEQRRVLQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000030749 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000008364 | 11 retrocopies | |
Echinops telfairi | ENSETEG00000001154 | 6 retrocopies | |
Homo sapiens | ENSG00000160752 | 6 retrocopies | |
Microcebus murinus | ENSMICG00000007468 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000023144 | 3 retrocopies | |
Mus musculus | ENSMUSG00000059743 | 5 retrocopies | |
Nomascus leucogenys | ENSNLEG00000012099 | 6 retrocopies | |
Pongo abelii | ENSPPYG00000000747 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000001422 | 9 retrocopies | |
Rattus norvegicus | ENSRNOG00000043377 | 3 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000004475 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000013326 | 1 retrocopy |