Parental gene: | Fdps, ENSRNOG00000043377 |
| Aliases: | Fdps, Ac2-125, FPS |
| Description: | farnesyl pyrophosphate synthase [Source:RefSeq peptide;Acc:NP_114028] |
| Organism: | Rat (Rattus norvegicus) |
| Coordinates: | 2:207805216..207826348(-) |
>ENSRNOG00000043377
ATGCCCCTGTCCCGCTGGCTGAGATCTCTGGGGGTCTTCCTGCTGCCAGCCCCCTGCTGGGCACCCCGGGAGAGGTGGCT
TGGTTACCTACAACGACCCTCCCTGGCATATGGGTGTCCAGTCCTTGGGGCTTGGCACAGTGCCCGCTGGTGGTGCCAAG
TGTGGACAGAGGAGCCTCGAGCATTTAGCTCCTCTGTCAGAATGAATGGGGACCAGAAACTGGATGTTCATAACCAAGAA
AAGCAGAATTTCATCCAGCACTTCTCCCAGATTGTCAAGGTGCTGACTGAGGATGAACTGGGACACCCAGAGAAGGGAGA
TGCTATTACCCGGATCAAAGAGGTCCTGGAGTACAACACTGTAGGAGGCAAGTACAATCGGGGTCTGACGGTGGTACAGA
CCTTCCAGGAACTGGTGGAACCAAGGAAACAGGATGCTGAGAGCCTACAGCGGGCCCTGACGGTGGGCTGGTGTGTAGAA
CTGCTCCATGCTTTCTTCCTCGTGTTAGATGACATCATGGACTCTTCCCACACTCGCCGGGGGCAGATCTGCTGGTATCA
GAAGCCGGGCATAGGCTTGGATGCCATCAACGATGCTCTGCTTCTGGAAGCCGCTATCTACCGCCTGCTTAAGTTCTACT
GCAGGGAGCAGCCCTACTACCTCAACCTGCTGGAGCTCTTTCTACAGAGTTCCTATCAGACTGAGATCGGGCAGACTCTC
GACCTCATCACAGCACCCCAGGGCCAAGTGGATCTTGGTAGATACACTGAAAAGAGGTACAAATCTATCGTCAAGTACAA
GACAGCTTTCTACTCTTTCTACCTGCCTATCGCGGCTGCCATGTACATGGCTGGAATTGATGGGGAGAAGGAACACGCTA
ATGCCCTGAAGATCCTGCTGGAGATGGGCGAGTTCTTCCAGATCCAGGAGAATTATGGGCAGAAGGACCCAGAAAAAGTG
GCGCGGGTGAAAGCACTGTACGAGGAGCTGGATCTGCGGAGTGTGTTCTTCAAGTACGAGGAAGACAGTTACAACCGCCT
CAAGAGTCTCATAGAGCAGTGCTCCGCGCCCCTGCCCCCATCCATCTTCCTGGAACTAGCAAACAAGATCTACAAGCGGA
GAAACTCCTGCTCAGATCTTAGCCCTGATGAGTCTCCAGTGTCAGTCTACTCTCGAGACCTGCCGGGTAATGAGGATGCC
AACCCTCAGGCCAGCATCTTCCCCTTGGAGCTGGGCTCTCCTCTGGCTCCCGCGGTGCGCAGTTCCTGGTCGTTTGCCGG
TGTTCCGGGGGCCCAGCGGCTGTGGATGGCAGAAGCCCAGAGTGGGACTGGTCAGCTGCAGGAGCAGAAGAAAGGTCTCC
TGATAGCTGTCAGCGCTTCAGTGGACAAAATCATCTCGCACTTTGGGGCTGCTAGGAACTTGGTTCAGAAAGCTCAACTG
GGGGATAGCCGGCTGAGTCCAGATGTGGGGCATCTGGTATTGACCACGCTCTGCCCGGCTCTCCATGCTCTGGTGGCTGA
TGGGCTGAAGCCATTCCGGAAGGACCTCATTACCGGGCAGCGTAGGAGTAGCCCTTGGAGCGTGGTGGAGGCCTCTGTGA
AACCAGGTTCCTGCACACATTCCATGGGATCTCTGTACAGCCAGGTCAGCCGACTGGCCCCCCTGAGTAGCAGCCGCAGC
CGCTTCCACGCTTTCATCTTGGGCCTCCTCAATACCAAACAGTTGGAACTGTGGTTCTCCACCCTCCAGGAGGATGCAGG
CCTCCTATCCCTCTTGTATCTGCCCACCGGCTTCTTTTCCCTGGCACGCGGTAGCTGTCCATCCCTGGCTACAGAGCTGC
TGCTTCTGCTGCAGCCGCTGTCGGTGCTCACCTTCCACCTGGACCTGCTCTTTGAGCACCACCACCACCTGCCCCTGGGC
CTGCAGCAGGCTCCTGCCCCTTCAGGCCCCCCTCCTGCCCTCCAGCAGACTATGCAGGCTGTGCTGCACTGGGGGGGACG
TTTGGCTCAGACTCTCCGAGGGACTTCAGGGGAGGCCACTACAGACTCTTCGACCCCCTCCACGCGCCCTCCACCAGGCA
GCTGGTGGGATCAGCTGACCCAGGCTTCTCGAGTCTATGCCTCTGGAGGCACTGAGGGCTTCCCTCTTCTTCGGTGGGGA
CCCAGGCGGAATGGAACTACCGCTGAGGGTACACAGGAGGCACCTCCACCCACGGAACAAACCACACCAGGCAGAAGCGT
GTGGTTGGGGCGGCTATTTGGTGTGCCTGGGTGCTCCTCAGAAACTGACAGCGGCGCCTTCAAGTCCAGGAGACCATCCA
GCTGGTTGCCCCCAACAGTAAGTGTGCTGGCTCTGGTGAAGAGGGGGACGCCACCCGAGGTCCCTCCTGAGGAGCCTGTG
AAGGAACCAGCCTGCATGGTGCAGGCTGACAGGGCAGTCCGGGCTCTCTGTGACCACACTGCTGCAGGACCTGACCAGTT
GAGCTTCCAGCGTGGGGAAGTGCTTCGTGTCATTTCCACAGTGGATGAGGACTGGCTTCGCTGTGGGCGGGATGGTGTGG
AGGGGCTGGTGCCGACTGCTGTTTCAGTGGCTGATGGAGCCCGAATAAAGACTAGAACAATGGAAGCACAGCCCTTGTAA
ATGCCCCTGTCCCGCTGGCTGAGATCTCTGGGGGTCTTCCTGCTGCCAGCCCCCTGCTGGGCACCCCGGGAGAGGTGGCT
TGGTTACCTACAACGACCCTCCCTGGCATATGGGTGTCCAGTCCTTGGGGCTTGGCACAGTGCCCGCTGGTGGTGCCAAG
TGTGGACAGAGGAGCCTCGAGCATTTAGCTCCTCTGTCAGAATGAATGGGGACCAGAAACTGGATGTTCATAACCAAGAA
AAGCAGAATTTCATCCAGCACTTCTCCCAGATTGTCAAGGTGCTGACTGAGGATGAACTGGGACACCCAGAGAAGGGAGA
TGCTATTACCCGGATCAAAGAGGTCCTGGAGTACAACACTGTAGGAGGCAAGTACAATCGGGGTCTGACGGTGGTACAGA
CCTTCCAGGAACTGGTGGAACCAAGGAAACAGGATGCTGAGAGCCTACAGCGGGCCCTGACGGTGGGCTGGTGTGTAGAA
CTGCTCCATGCTTTCTTCCTCGTGTTAGATGACATCATGGACTCTTCCCACACTCGCCGGGGGCAGATCTGCTGGTATCA
GAAGCCGGGCATAGGCTTGGATGCCATCAACGATGCTCTGCTTCTGGAAGCCGCTATCTACCGCCTGCTTAAGTTCTACT
GCAGGGAGCAGCCCTACTACCTCAACCTGCTGGAGCTCTTTCTACAGAGTTCCTATCAGACTGAGATCGGGCAGACTCTC
GACCTCATCACAGCACCCCAGGGCCAAGTGGATCTTGGTAGATACACTGAAAAGAGGTACAAATCTATCGTCAAGTACAA
GACAGCTTTCTACTCTTTCTACCTGCCTATCGCGGCTGCCATGTACATGGCTGGAATTGATGGGGAGAAGGAACACGCTA
ATGCCCTGAAGATCCTGCTGGAGATGGGCGAGTTCTTCCAGATCCAGGAGAATTATGGGCAGAAGGACCCAGAAAAAGTG
GCGCGGGTGAAAGCACTGTACGAGGAGCTGGATCTGCGGAGTGTGTTCTTCAAGTACGAGGAAGACAGTTACAACCGCCT
CAAGAGTCTCATAGAGCAGTGCTCCGCGCCCCTGCCCCCATCCATCTTCCTGGAACTAGCAAACAAGATCTACAAGCGGA
GAAACTCCTGCTCAGATCTTAGCCCTGATGAGTCTCCAGTGTCAGTCTACTCTCGAGACCTGCCGGGTAATGAGGATGCC
AACCCTCAGGCCAGCATCTTCCCCTTGGAGCTGGGCTCTCCTCTGGCTCCCGCGGTGCGCAGTTCCTGGTCGTTTGCCGG
TGTTCCGGGGGCCCAGCGGCTGTGGATGGCAGAAGCCCAGAGTGGGACTGGTCAGCTGCAGGAGCAGAAGAAAGGTCTCC
TGATAGCTGTCAGCGCTTCAGTGGACAAAATCATCTCGCACTTTGGGGCTGCTAGGAACTTGGTTCAGAAAGCTCAACTG
GGGGATAGCCGGCTGAGTCCAGATGTGGGGCATCTGGTATTGACCACGCTCTGCCCGGCTCTCCATGCTCTGGTGGCTGA
TGGGCTGAAGCCATTCCGGAAGGACCTCATTACCGGGCAGCGTAGGAGTAGCCCTTGGAGCGTGGTGGAGGCCTCTGTGA
AACCAGGTTCCTGCACACATTCCATGGGATCTCTGTACAGCCAGGTCAGCCGACTGGCCCCCCTGAGTAGCAGCCGCAGC
CGCTTCCACGCTTTCATCTTGGGCCTCCTCAATACCAAACAGTTGGAACTGTGGTTCTCCACCCTCCAGGAGGATGCAGG
CCTCCTATCCCTCTTGTATCTGCCCACCGGCTTCTTTTCCCTGGCACGCGGTAGCTGTCCATCCCTGGCTACAGAGCTGC
TGCTTCTGCTGCAGCCGCTGTCGGTGCTCACCTTCCACCTGGACCTGCTCTTTGAGCACCACCACCACCTGCCCCTGGGC
CTGCAGCAGGCTCCTGCCCCTTCAGGCCCCCCTCCTGCCCTCCAGCAGACTATGCAGGCTGTGCTGCACTGGGGGGGACG
TTTGGCTCAGACTCTCCGAGGGACTTCAGGGGAGGCCACTACAGACTCTTCGACCCCCTCCACGCGCCCTCCACCAGGCA
GCTGGTGGGATCAGCTGACCCAGGCTTCTCGAGTCTATGCCTCTGGAGGCACTGAGGGCTTCCCTCTTCTTCGGTGGGGA
CCCAGGCGGAATGGAACTACCGCTGAGGGTACACAGGAGGCACCTCCACCCACGGAACAAACCACACCAGGCAGAAGCGT
GTGGTTGGGGCGGCTATTTGGTGTGCCTGGGTGCTCCTCAGAAACTGACAGCGGCGCCTTCAAGTCCAGGAGACCATCCA
GCTGGTTGCCCCCAACAGTAAGTGTGCTGGCTCTGGTGAAGAGGGGGACGCCACCCGAGGTCCCTCCTGAGGAGCCTGTG
AAGGAACCAGCCTGCATGGTGCAGGCTGACAGGGCAGTCCGGGCTCTCTGTGACCACACTGCTGCAGGACCTGACCAGTT
GAGCTTCCAGCGTGGGGAAGTGCTTCGTGTCATTTCCACAGTGGATGAGGACTGGCTTCGCTGTGGGCGGGATGGTGTGG
AGGGGCTGGTGCCGACTGCTGTTTCAGTGGCTGATGGAGCCCGAATAAAGACTAGAACAATGGAAGCACAGCCCTTGTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_liver | 215 .03 RPM |
| SRP017611_kidney | 47 .24 RPM |
| SRP017611_brain | 133 .15 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Canis familiaris | ENSCAFG00000030749 | ortholog_one2many | 2 retrogenes | |
| Callithrix jacchus | ENSCJAG00000008364 | possible_ortholog | 11 retrogenes | |
| Echinops telfairi | ENSETEG00000001154 | ortholog_one2many | 6 retrogenes | |
| Homo sapiens | ENSG00000160752 | possible_ortholog | 6 retrogenes | |
| Microcebus murinus | ENSMICG00000007468 | possible_ortholog | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000023144 | possible_ortholog | 3 retrogenes | |
| Mus musculus | ENSMUSG00000059743 | ortholog_one2many | 5 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000012099 | possible_ortholog | 6 retrogenes | |
| Pongo abelii | ENSPPYG00000000747 | possible_ortholog | 3 retrogenes | |
| Pan troglodytes | ENSPTRG00000001422 | possible_ortholog | 9 retrogenes | |
| Ictidomys tridecemlineatus | ENSSTOG00000004475 | possible_ortholog | 1 retrogene | |
| Tursiops truncatus | ENSTTRG00000013326 | ortholog_one2many | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_rnor_153 | 86.62 | 88.95 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_rnor_1175 | 73.91 | 51.27 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_rnor_2897 | 90.37 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSRNOG00000043377 retrocopies