RetrogeneDB ID: | retro_etel_1818 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_302606:3900..4560(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | FDPS | ||
Ensembl ID: | ENSETEG00000001154 | ||
Aliases: | None | ||
Description: | farnesyl diphosphate synthase [Source:HGNC Symbol;Acc:3631] |
Percent Identity: | 78.28 % |
Parental protein coverage: | 62.43 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | VFQALAEPGQQDADSLQRALTVGWCVELLQAFLLILDDIMDSSLTRRGQPCWYQKPGIGLDAINDAMLLE |
.FQAL.EP..Q.ADSLQ.ALTVGW..ELLQAFLLILDD.MD.SLTRRGQPCWYQKPG.GLDAINDA.LLE | |
Retrocopy | LFQALVEPRKQEADSLQGALTVGWWAELLQAFLLILDDRMDPSLTRRGQPCWYQKPGMGLDAINDARLLE |
Parental | SSIYRLLKFYCRGQPYYLNLMELFLESSYQTEIGQTLDLITAPQGNVDLSRFTPKRYKSIVKYKTSFYSF |
S..Y.L....C.GQP.YL.L..L.LE.SY..E.GQ.LDLITA.QGNV.LSRFTPKRYKSI.KY.T.FYSF | |
Retrocopy | SCVYLLVML*CPGQPCYLHLLKLSLEDSYLAEMGQALDLITASQGNVGLSRFTPKRYKSILKYRTAFYSF |
Parental | YHPVAAAMYMAGIDGEKEHADAKRILLEMGEYFQIQDDYLDLFGDPSVTGKVGTDIQDNKCSWLVVQCLQ |
YHPVAAAM.MA.IDGE.EHA.AKR.L.E.G..FQIQDD.LDLFGDPSVTGKVGTDIQDNKC.WLV..CLQ | |
Retrocopy | YHPVAAAMSMAVIDGE-EHAKAKRFLQETGVFFQIQDDSLDLFGDPSVTGKVGTDIQDNKCRWLVGRCLQ |
Parental | RASPEQRRVLQ |
RASPEQRRVLQ | |
Retrocopy | RASPEQRRVLQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000030749 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000008364 | 11 retrocopies | |
Echinops telfairi | ENSETEG00000001154 | 6 retrocopies | |
Homo sapiens | ENSG00000160752 | 6 retrocopies | |
Microcebus murinus | ENSMICG00000007468 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000023144 | 3 retrocopies | |
Mus musculus | ENSMUSG00000059743 | 5 retrocopies | |
Nomascus leucogenys | ENSNLEG00000012099 | 6 retrocopies | |
Pongo abelii | ENSPPYG00000000747 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000001422 | 9 retrocopies | |
Rattus norvegicus | ENSRNOG00000043377 | 3 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000004475 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000013326 | 1 retrocopy |