RetrogeneDB ID: | retro_cjac_2081 | ||
Retrocopylocation | Organism: | Marmoset (Callithrix jacchus) | |
Coordinates: | 22:47748783..47749864(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCJAG00000008364 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 92.84 % |
Parental protein coverage: | 86.16 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | RALCSSLRMNGDQKSDVYAQEKQDFVQHFSQIVRVLTEDEMGHPETGDAIARLKEVLEYNAIGGKYHRGL |
RALCSSLRMNGDQKSDVYAQEKQDFVQHFSQIV.VLTEDEMGHPETGDAI.RLKEVLEYNAIGGKYHRGL | |
Retrocopy | RALCSSLRMNGDQKSDVYAQEKQDFVQHFSQIVTVLTEDEMGHPETGDAIIRLKEVLEYNAIGGKYHRGL |
Parental | TVLVAFRELAEPRKQDADSLQRALTVGWCVELLQAFFLVTDDIMDSSLTRRGQICWYQKPGVGLDAINDA |
TVLVAFREL.E.RKQDADSLQRALTVGWCVELL.AFFLVTD..MDSSLTRRGQICWY.KPGVGLDAINDA | |
Retrocopy | TVLVAFRELMETRKQDADSLQRALTVGWCVELL*AFFLVTDNTMDSSLTRRGQICWYRKPGVGLDAINDA |
Parental | VLLEACVYRLLKLYCR-EQPYYLNLIELFLQSSYQTEIGQTLDLITAPQDNVDLDRFTEKRYKSIVKYKT |
.LL.ACVY.LLKLYCR.EQ...LNLIELFLQSSYQTEIGQTLDLITAPQDNVDL.RFTEKRYKSIVKYKT | |
Retrocopy | ILLKACVYHLLKLYCR<EQAHHLNLIELFLQSSYQTEIGQTLDLITAPQDNVDLGRFTEKRYKSIVKYKT |
Parental | AFYSFYLPVAAAMYMAGIDGEKEHANAKKILLEMGEFFQIQDDYLDLFGDPSVTGKVGTDIQDNKCSWLV |
AFYSFYLPVAAAMY.AGIDGEKEHANAKKILLEMGEFFQIQDDYLDLFGDPSVTGKVGTD.QDNKCSWLV | |
Retrocopy | AFYSFYLPVAAAMYTAGIDGEKEHANAKKILLEMGEFFQIQDDYLDLFGDPSVTGKVGTDMQDNKCSWLV |
Parental | VQCLQRSTPEQRQILKENYGQKEAEKVARVKALYEELDLPAVFSKYEEDSYNHIMALIEQYAAP-LPPAI |
VQCLQRSTP.Q.QILKENYGQKEAEKVARVKAL.EELDLPA.FSKYEEDSYNHIMALIEQY.AP.LPPAI | |
Retrocopy | VQCLQRSTPKQCQILKENYGQKEAEKVARVKAL*EELDLPATFSKYEEDSYNHIMALIEQYKAP<LPPAI |
Parental | FLGLARKIYKRKK |
FLGL..KIYKRKK | |
Retrocopy | FLGLVCKIYKRKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP051959_colon | 0 .00 RPM | 23 .47 RPM |
SRP051959_heart | 0 .00 RPM | 5 .24 RPM |
SRP051959_kidney | 0 .00 RPM | 7 .57 RPM |
SRP051959_liver | 0 .02 RPM | 106 .46 RPM |
SRP051959_lung | 0 .00 RPM | 8 .85 RPM |
SRP051959_lymph_node | 0 .00 RPM | 11 .07 RPM |
SRP051959_skeletal_muscle | 0 .00 RPM | 5 .57 RPM |
SRP051959_spleen | 0 .00 RPM | 6 .70 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000030749 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000008364 | 11 retrocopies |
retro_cjac_1066, retro_cjac_1217, retro_cjac_1395, retro_cjac_157, retro_cjac_2011, retro_cjac_2081 , retro_cjac_2161, retro_cjac_299, retro_cjac_4154, retro_cjac_44, retro_cjac_70,
|
Echinops telfairi | ENSETEG00000001154 | 6 retrocopies | |
Homo sapiens | ENSG00000160752 | 6 retrocopies | |
Microcebus murinus | ENSMICG00000007468 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000023144 | 3 retrocopies | |
Mus musculus | ENSMUSG00000059743 | 5 retrocopies | |
Nomascus leucogenys | ENSNLEG00000012099 | 6 retrocopies | |
Pongo abelii | ENSPPYG00000000747 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000001422 | 9 retrocopies | |
Rattus norvegicus | ENSRNOG00000043377 | 3 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000004475 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000013326 | 1 retrocopy |