Parental gene:

PAFAH1B2, ENSCJAG00000012698

Aliases:None
Description:platelet-activating factor acetylhydrolase 1b, catalytic subunit 2 (30kDa) [Source:HGNC Symbol;Acc:8575]
Organism:Marmoset (Callithrix jacchus)
Coordinates:11:14728910..14761589(+)


>ENSCJAG00000012698
ATGAGCCAGGGAGACTCAAACCCAGCAGCTATTCCTCATGCAGCAGAAGATATTCAAGGAGATGACCGATGGATGTCTCA
GCACTCACAACAGATTTGTTTGGACTGTAAAGACAAAGAGGATGTACTGTTTGTGGGAGACTCCATGGTGCAGTTGATGC
AGCAATATGAGATATGGCGAGAGCTTTTTTCCCCACTTCATGCACTGAATTTTGGAATTGGGGGAGATACAACAAGACAT
GTTTTGTGGAGACTAAAGAATGGAGAACTGGAGAATATTAAGCCTAAGGTCATTGTTGTCTGGGTAGGAACAAACAACCA
CGAAAATACAGCAGAAGAGGTAGCCGGTGGGATCGAGGCCATCGTAAAACTTATCAACACAAGGCAGCCACAGGCCAAAA
TCATTGTATTGGGTTTGTTACCTCGAGGTGAGAAACCCAATCCTTTGAGGCAAAAGAACGCCAAGGTGAACCAACTCCTT
AAGGTTTCACTGCCGAAGCTTGCCAACGTGCAGCTCCTGGATGCTGACGGGGGTTTTGTGCACTCGGACGGTGCCATCTC
CTGCCACGACATGTTTGATTTTCTGCATCTGACAGGAGGGGGCTACGCAAAGATCTGCAAACCCCTGCATGAACTGATCA
TGCAGTTGTTGGAGGAAACACCTGAGGAGAAACACACCACCATTGCTTGA

Library Parental gene expression (RPM)
SRP051959_colon 14 .33 RPM
SRP051959_heart 13 .49 RPM
SRP051959_kidney 12 .89 RPM
SRP051959_liver 7 .93 RPM
SRP051959_lung 13 .39 RPM
SRP051959_lymph_node 12 .24 RPM
SRP051959_skeletal_muscle 5 .94 RPM
SRP051959_spleen 11 .76 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000008628 ortholog_one2one 2 retrogenes
retro_amel_1145, retro_amel_818,
Canis familiaris ENSCAFG00000013226 ortholog_one2one 1 retrogene
retro_cfam_1335,
Dipodomys ordii ENSDORG00000011274 ortholog_one2one 1 retrogene
retro_dord_560,
Felis catus ENSFCAG00000029945 ortholog_one2one 1 retrogene
retro_fcat_270,
Homo sapiens ENSG00000168092 ortholog_one2one 2 retrogenes
retro_hsap_1148, retro_hsap_4661,
Gorilla gorilla ENSGGOG00000028197 ortholog_one2one 2 retrogenes
retro_ggor_2893, retro_ggor_893,
Macaca mulatta ENSMMUG00000002050 ortholog_one2one 2 retrogenes
retro_mmul_2481, retro_mmul_892,
Mustela putorius furo ENSMPUG00000004246 ortholog_one2one 1 retrogene
retro_mputfur_898,
Nomascus leucogenys ENSNLEG00000007337 ortholog_one2one 2 retrogenes
retro_nleu_1096, retro_nleu_946,
Pongo abelii ENSPPYG00000003907 ortholog_one2one 2 retrogenes
retro_pabe_3621, retro_pabe_953,
Pan troglodytes ENSPTRG00000004318 ortholog_one2one 2 retrogenes
retro_ptro_3097, retro_ptro_782,
Rattus norvegicus ENSRNOG00000018032 ortholog_one2one 1 retrogene
retro_rnor_2585,
Sarcophilus harrisii ENSSHAG00000011403 ortholog_one2one 1 retrogene
retro_shar_617,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_3325 62.77 99.13
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Download FASTA sequences of all ENSCJAG00000012698 retrocopies