RetrogeneDB ID: | retro_nleu_946 | ||
Retrocopylocation | Organism: | Gibbon (Nomascus leucogenys) | |
Coordinates: | GL397276.1:33453687..33454212(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PAFAH1B2 | ||
Ensembl ID: | ENSNLEG00000007337 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 68.75 % |
Parental protein coverage: | 62.41 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 0 |
Parental | EPEVEELLLVLGPEEGRAGAGPTGPSERQTRYPPTPQPLGARTDPLLQCRMSQGDSNPAAIPHAAEDIQG |
......LLLVLGP.EGRA..GP.G.SE.Q...P...QP..A..D.L..CRMSQ.D.N.AAIPHA.EDIQG | |
Retrocopy | DKNISSLLLVLGPQEGRARGGPQGLSE*QKHHPSMLQPCKASMDSLRECRMSQVD*NTAAIPHAVEDIQG |
Parental | DDRWMSQHNRFVLDCKDKEPDVLFVGDSMVQLMQQYEIWRELFSPLHALNFGIGGDTTRHVLWRLKNGEL |
DDRW.SQHNRFVLD.KDK.P..LFVGD.M.QLMQQ.EIWRE.FSP.H.LNFG...D.TRHVL..LK..EL | |
Retrocopy | DDRWISQHNRFVLDGKDKKPNALFVGDPMAQLMQQHEIWREVFSPFHVLNFGTEED-TRHVL*KLKSREL |
Parental | ENIKPKVIVVWVGTNNHENTAEEVAGGIEAIVQLIN |
ENIKPKVIVVW.GTNNHENTA.E..GGIEAI...IN | |
Retrocopy | ENIKPKVIVVWIGTNNHENTAVELEGGIEAIIPSIN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000008628 | 2 retrocopies | |
Canis familiaris | ENSCAFG00000013226 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000012698 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000011274 | 1 retrocopy | |
Felis catus | ENSFCAG00000029945 | 1 retrocopy | |
Homo sapiens | ENSG00000168092 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000028197 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000002050 | 2 retrocopies | |
Mustela putorius furo | ENSMPUG00000004246 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000007337 | 2 retrocopies |
retro_nleu_1096, retro_nleu_946 ,
|
Pongo abelii | ENSPPYG00000003907 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000004318 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000018032 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000011403 | 1 retrocopy |