RetrogeneDB ID: | retro_nleu_1096 | ||
Retrocopylocation | Organism: | Gibbon (Nomascus leucogenys) | |
Coordinates: | GL397281.1:22438493..22439314(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PAFAH1B2 | ||
Ensembl ID: | ENSNLEG00000007337 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 84.36 % |
Parental protein coverage: | 97.16 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | ELLLVLGPEEGRAGAGPTG-PSERQTRYPPTPQPLGARTDPLLQCRMSQGDSNPAAIPHAAEDIQGDDRW |
.LLLVLGPEE..A..GP...P.ERQT..PPTPQPLG..TDPLLQC.M.QGDSNPAAIPHAAEDIQGDDRW | |
Retrocopy | QLLLVLGPEERYARVGPPD<PRERQT*HPPTPQPLGVCTDPLLQCGMNQGDSNPAAIPHAAEDIQGDDRW |
Parental | MSQHNRFVLDCKDKEPDVLFVGDSMVQLMQQYEIWRELFSPLHALNFGIGGDTTRHVLWRLKNGELENIK |
MSQHNRFVLDCKDK.PDV.FVG.S.VQLMQ.YEIW.ELFSPLHALNFG.GGDTTRHVLWRLKNGEL.NIK | |
Retrocopy | MSQHNRFVLDCKDKQPDVPFVGGSTVQLMQPYEIW*ELFSPLHALNFGTGGDTTRHVLWRLKNGELGNIK |
Parental | PKVIVVWVGTNNHENTAEEVAGGIEAIVQLINTRQPQAKIIVLGLLPRGEKPNPLRQKNAKVNQLLKVSL |
PKVIVVW.G.NNHEN.AEEVAGG..AIVQLINTRQPQAKIIV..LLP.GEKPNPLRQKNA.VNQL.K.SL | |
Retrocopy | PKVIVVWLGRNNHENMAEEVAGGMAAIVQLINTRQPQAKIIVFDLLPQGEKPNPLRQKNARVNQLVKISL |
Parental | PKLANVQLLDTDGGFVHSDGAISCHDMFDFLHLTGGGYAKICKPLHELIMQLLEETPEEKQTTIA |
.KL.NV.LLDTD.GFVHSD.AISCHDMFDFLHLTGGG..K.CKPL.ELIMQLLEETPEEKQTTIA | |
Retrocopy | LKLTNVRLLDTDRGFVHSDRAISCHDMFDFLHLTGGGSSKVCKPLNELIMQLLEETPEEKQTTIA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000008628 | 2 retrocopies | |
Canis familiaris | ENSCAFG00000013226 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000012698 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000011274 | 1 retrocopy | |
Felis catus | ENSFCAG00000029945 | 1 retrocopy | |
Homo sapiens | ENSG00000168092 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000028197 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000002050 | 2 retrocopies | |
Mustela putorius furo | ENSMPUG00000004246 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000007337 | 2 retrocopies |
retro_nleu_1096 , retro_nleu_946,
|
Pongo abelii | ENSPPYG00000003907 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000004318 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000018032 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000011403 | 1 retrocopy |