RetrogeneDB ID: | retro_pabe_3621 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | X:25165808..25166501(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PAFAH1B2 | ||
Ensembl ID: | ENSPPYG00000003907 | ||
Aliases: | PAFAH1B2, PAFAHB | ||
Description: | Platelet-activating factor acetylhydrolase IB subunit beta [Source:UniProtKB/Swiss-Prot;Acc:Q5R4G2] |
Percent Identity: | 84.42 % |
Parental protein coverage: | 95.85 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | CRMSQGDSNPAAIPHAAEDIQGDDRWMSQHNRFVLDCKDKEPDVLFVGDSMVQLMQQYEIWRELFSPLHA |
CRM.QGDSNPAAIPHAAEDIQGDD..MSQHNRFVLDCKDK.PDV.FVG.S.VQLMQ.YEIWRELFSPLHA | |
Retrocopy | CRMNQGDSNPAAIPHAAEDIQGDDTGMSQHNRFVLDCKDKQPDVPFVGGSVVQLMQPYEIWRELFSPLHA |
Parental | LNFGIGGDTTRHVLWRLKNGELENIKPKVIVVWVGTNNHENTAEEVAGGIEAIVQLINTRQPQAKIIVLG |
LNFG.GGDT.RHVLWR.KNGEL.N.KPKV.V.W.G.N.HEN.AEEVAGG..AI.QLINTRQPQAKIIV.. | |
Retrocopy | LNFGTGGDTARHVLWRVKNGELGNVKPKVTVFWLGRNKHENMAEEVAGGMAAIIQLINTRQPQAKIIVFD |
Parental | LLPRGEKPNPLRQKNAKVNQLLKVSLPKLANVQLLDTDGGFVHSDGAISCHDMFDFLHLTGGGYAKICKP |
LLP.GEKPN.LRQKNAKVN.L.K.SL.KL.NVQLLDTD.GFVHSD.AISCHDMFDFLHLTGGGY.K.CKP | |
Retrocopy | LLPQGEKPNSLRQKNAKVNPLVKISLLKLTNVQLLDTDRGFVHSDHAISCHDMFDFLHLTGGGYSKVCKP |
Parental | LHELIMQLLEETPEEKQTTIA |
L.ELIMQLLEETPEEKQTTIA | |
Retrocopy | LNELIMQLLEETPEEKQTTIA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 90 .01 RPM |
SRP007412_cerebellum | 0 .00 RPM | 112 .85 RPM |
SRP007412_heart | 0 .00 RPM | 31 .28 RPM |
SRP007412_kidney | 0 .00 RPM | 37 .09 RPM |
SRP007412_liver | 0 .00 RPM | 39 .90 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_4661 |
Pan troglodytes | retro_ptro_3097 |
Gorilla gorilla | retro_ggor_2893 |
Macaca mulatta | retro_mmul_2481 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000008628 | 2 retrocopies | |
Canis familiaris | ENSCAFG00000013226 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000012698 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000011274 | 1 retrocopy | |
Felis catus | ENSFCAG00000029945 | 1 retrocopy | |
Homo sapiens | ENSG00000168092 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000028197 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000002050 | 2 retrocopies | |
Mustela putorius furo | ENSMPUG00000004246 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000007337 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000003907 | 2 retrocopies |
retro_pabe_3621 , retro_pabe_953,
|
Pan troglodytes | ENSPTRG00000004318 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000018032 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000011403 | 1 retrocopy |