Parental gene:

PABPC4, ENSECAG00000009396

Aliases:None
Description:poly(A) binding protein, cytoplasmic 4 (inducible form) [Source:HGNC Symbol;Acc:8557]
Organism:Horse (Equus caballus)
Coordinates:2:18436116..18450640(+)


>ENSECAG00000009396
ATGAACGCTGCAGCCAGCAGCTACCCCATGGCCTCCCTGTACGTGGGCGACCTGCACTCGGACGTCACCGAGGCCATGCT
GTATGAAAAGTTCAGTCCTGCGGGGCCTGTGCTGTCCATCCGGGTCTGCCGCGATATGATCACCCGCCGCTCCCTGGGTT
ATGCCTACGTCAACTTCCAGCAGCCGGCTGACGCCGAGCGGGCCTTGGATACCATGAACTTTGATGTGATTAAGGGAAAG
CCAATCCGGATCATGTGGTCTCAGAGGGATCCCTCTTTGAGAAAATCTGGTGTGGGGAACGTCTTCATCAAGAACCTGGA
CAAATCTATAGATAACAAGGCACTTTATGATACTTTCTCTGCTTTTGGAAACATTCTGTCCTGCAAGGTGGTGTGTGATG
AGAACGGCTCTAAGGGTTATGCCTTTGTCCACTTCGAGACCCAAGAGGCTGCCGACAAGGCCATCGAGAAGATGAACGGC
ATGCTCCTCAATGACCGCAAAGTGTTTGTGGGCAGATTCAAGTCTCGAAAAGAGCGAGAAGCTGAGCTTGGAGCCAAAGC
CAAGGAATTCACCAATGTTTACATAAAAAACTTTGGGGAAGAGGTGGATGATGAGAGTCTGAAAGAGCTATTCAGCCAGT
TTGGTAAGACCCTAAGTGTCAAGGTGATGAGAGATCCCAGTGGGAAATCCAAAGGATTTGGCTTTGTGAGTTATGAAAAA
CACGAGGATGCCAATAAGGCTGTGGAAGAGATGAATGGAAAAGAAATCAGTGGGAAAGTCATTTTTGTAGGCCGTGCACA
GAAGAAAGTGGAACGGCAGGCTGAGTTAAAACGGAAATTTGAACAGCTGAAACAGGAGAGAATTAGTCGATATCAGGGGG
TAAATCTCTACATTAAGAACCTGGATGACACCATTGATGATGAGAAGTTAAGGAAAGAGTTTTCTCCTTTTGGATCGATC
ACCAGTGCTAAGGTAATGCTGGAGGATGGGAGAAGCAAAGGGTTCGGCTTTGTCTGCTTCTCATCTCCGGAAGAGGCAAC
TAAAGCAGTCACTGAAATGAATGGACGCATCGTGGGCTCCAAGCCACTGTATGTTGCCCTGGCCCAGAGGAAGGAAGAGA
GAAAGGCTCACCTGACCAACCAGTATATGCAGCGAGTAGCTGGGATGAGAGCACTCCCTGCCAATGCCATCTTAAATCAG
TTCCAGCCTGCAGCTGGTGGCTACTTCGTGCCAGCAGTTCCACAGGCTCAGGGAAGACCTCCATATTATACACCTAACCA
GTTAGCACAGATGAGGCCTAATCCACGCTGGCAGCAAGGTGGGAGACCTCAAGGCTTCCAAGGAATGCCAAGTGCTATAC
GCCAATCTGGGCCTCGTCCAACTCTTCGCCATCTGGCTCCAACTGGTAATGCTCCGGCCTCTCGTGGCCTCCCTACTACC
GCTCAGAGAGTCGGGTCTGAGTGCCCGGACCGCTTGGCTATGGACTTTGGTGGGGCTGGTGCCGCCCAGCAAGGGCTGAC
TGACAGCTGCCAGTCTGGAGGTGTTCCCACAGCTGTGCAGAACTTAGCACCTCGTGCTGCTGTTGCTGCCGCTGCCCCTC
GGGCTGTTGCACCTTACAAATACGCATCCAGTGTCCGCAGCCCTCACCCTGCCATACAGCCTCTGCAGGCACCCCAGCCG
GCGGTCCACGTGCAGGGGCAGGAGCCCCTGACCGCCTCCATGCTGGCTGCAGCACCCCCCCAGGAACAGAAGCAGATGCT
GGGAGAACGTTTGTTCCCGCTCATACAGACCATGCATTCAAACCTGGCTGGAAAGATTACAGGGATGCTGCTGGAGATCG
ACAACTCTGAGCTGCTGCACATGCTAGAGTCCCCTGAGTCGCTCCGCTCCAAGGTGGATGAAGCTGTGGCGGTTCTGCAG
GCTCATCACGCCAAGAAGGAAGCTGCCCAGAAGGTGGGCGCTGTCACTGCTGCTACCTCCTAG

Library Parental gene expression (RPM)
SRP021940_articular_cartilage 87 .72 RPM
SRP021940_cerebellum 38 .79 RPM
SRP021940_embryo 154 .79 RPM
SRP021940_placental_villous 56 .96 RPM
SRP021940_synovial_membrane 102 .07 RPM
SRP021940_testis 77 .63 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000011535 ortholog_one2one 2 retrogenes
retro_amel_107, retro_amel_676,
Bos taurus ENSBTAG00000017125 ortholog_one2one 3 retrogenes
retro_btau_1492, retro_btau_28, retro_btau_656,
Canis familiaris ENSCAFG00000003081 ortholog_one2one 2 retrogenes
retro_cfam_45, retro_cfam_837,
Choloepus hoffmanni ENSCHOG00000005327 ortholog_one2one 3 retrogenes
retro_chof_1150, retro_chof_1182, retro_chof_1274,
Felis catus ENSFCAG00000015254 ortholog_one2one 2 retrogenes
retro_fcat_116, retro_fcat_545,
Loxodonta africana ENSLAFG00000000151 ortholog_one2one 3 retrogenes
retro_lafr_1144, retro_lafr_390, retro_lafr_597,
Microcebus murinus ENSMICG00000016633 possible_ortholog 1 retrogene
retro_mmur_675,
Myotis lucifugus ENSMLUG00000012068 ortholog_one2one 2 retrogenes
retro_mluc_228, retro_mluc_397,
Monodelphis domestica ENSMODG00000017657 ortholog_one2many 2 retrogenes
retro_mdom_1090, retro_mdom_1805,
Mustela putorius furo ENSMPUG00000014414 ortholog_one2one 2 retrogenes
retro_mputfur_152, retro_mputfur_546,
Mus musculus ENSMUSG00000011257 ortholog_one2many 7 retrogenes
retro_mmus_2006, retro_mmus_2326, retro_mmus_2327, retro_mmus_798, retro_mmus_801, retro_mmus_803, retro_mmus_805,
Rattus norvegicus ENSRNOG00000015642 ortholog_one2many 2 retrogenes
retro_rnor_175, retro_rnor_92,
Sarcophilus harrisii ENSSHAG00000018139 ortholog_one2one 1 retrogene
retro_shar_823,
Sus scrofa ENSSSCG00000003660 ortholog_one2one 3 retrogenes
retro_sscr_1210, retro_sscr_974, retro_sscr_975,
Tursiops truncatus ENSTTRG00000014340 ortholog_one2one 2 retrogenes
retro_ttru_1117, retro_ttru_246,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ecab_2 67.40 55.15
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2. retro_ecab_502 73.78 56.06
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Download FASTA sequences of all ENSECAG00000009396 retrocopies