Parental gene: | PABPC4, ENSTTRG00000014340 |
| Aliases: | None |
| Description: | poly(A) binding protein, cytoplasmic 4 (inducible form) [Source:HGNC Symbol;Acc:8557] |
| Organism: | Dolphin (Tursiops truncatus) |
| Coordinates: | GeneScaffold_436:12266..30968(-) |
>ENSTTRG00000014340
GAGCGGGCCTTGGATACCATGAACTTTGATGTGATTAAGGGAAAGCCAATCCGTATCATGTGGTCTCAGAGGGATCCCTC
TTTGCGAAAATCTGGCGTGGGAAATGTCTTCATCAAGAACCTGGACAAATCTATAGATAACAAGGCACTTTATGATACTT
TTTCGGCATTTGGAAACATTCTGTCCTGCAAGGTGGTGTGTGATGAGAACGGCTCTAAGGGTTATGCCTTTGTCCACTTC
GAGACCCAGGAGGCTGCCGACAAGGCTATCGAGAAGATGAATGGCATGCTCCTCAATGACCGCAAAAAAGAGCTATTCAG
CCAGTTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNGCCGTGGAGGAGATGAATGGAAAAGAAATCAGTGGGAAAGTCATTTTCGTCGGCCGT
GCACAGAAGAAAGTGGAACGGCAGGCCGAGTTAAAACGAAAATTTGAACAGCTGAAACAGGAGAGAATTAGTCGGTATCA
GGGGGTGAACCTCTACATTAAGAACTTGGATGACACCATTGATGATGAAAAGTTAAGGAAAGAGTTTTCTCCTTTTGGAT
CAATCACCAGTGCTAAGGTGATGCTGGAGGATGGGAGAAGCAAAGGGTTTGGGTTTGTCTGCTTCTCATCCCCTGAAGAG
GCAACCAAAGCAGTCACGGAGATGAACGGACGCATCGTGGGTTCCAAGCCACTGTATGTTGCCCTGGCCCAGAGAAAAGA
AGAGAGAAAGGCTCACCTGACCAACCAGTATATGCAGCGGGTGGCCGGGATGAGAGCGCTCCCCGCCAATGCCATCTTAA
ATCAGTTCCAGCCTGCAGCTGGGGGCTACTTTGTGCCAGCAGTTCCACAGGCTCAGGGAAGACCTCCATATTACACACCT
AACCAGTTAGCACAGATGAGGCCTAATCCACGCTGGCAGCAAGGTGGGAGACCTCAAGGCTTCCAAGGAATGCCAAGTGC
TATACGCCAGTCTGGGCCTCGTCCAGCTCTTCGCCATCTGGCTCCAACTGGTAATGCTCCGGCCTCTCGTGGCCTCCCTA
CTACCGCTCAGAGAGTCGGGTCTGAGTGCCCGGACCGCTTGGCTATGGACTTTGGTGGGGCTGGTGCCGCCCAGCAAGGG
CTGACTGACAGCTGCCAGTCTGGAGGTGTTCCCACAGCTGTGCAGAGCCTAGCGCCTCGTGCTGCTGTTGCCACCGCTGC
TCCTCGGGCTGTTGCACCTTACAAATACGCCTCCAGTGTCCGCAGCCCTCACCCCGCCATCCAGCCCCTGCAGGCACCCC
AGCCTGCGGTCCACGTGCAGGGGCAGGAGCCGCTGACCGCCTCCATGCTGGCCGCAGCACCCCCGCAGGAACAGAAACAG
ATGCTGGGTGAACGTTTGTTCCCGCTCATCCAGACGATGCACTCAAACCTGGCTGGGAAGATCACGGGGATGCTGCTGGA
GATTGACAACTCGGAGCTGCTGCACATGCTGGAGTCCCCCGAGTCTCTCCGCTCCAAGGTGGATGAAGCTGTGGCGGTCC
TACAGGCTCATCATGCCAAGAAAGAAGCTGCCCAGAAGGTGGGCGCTGTTGCTGCTGCTACCTCTTAG
GAGCGGGCCTTGGATACCATGAACTTTGATGTGATTAAGGGAAAGCCAATCCGTATCATGTGGTCTCAGAGGGATCCCTC
TTTGCGAAAATCTGGCGTGGGAAATGTCTTCATCAAGAACCTGGACAAATCTATAGATAACAAGGCACTTTATGATACTT
TTTCGGCATTTGGAAACATTCTGTCCTGCAAGGTGGTGTGTGATGAGAACGGCTCTAAGGGTTATGCCTTTGTCCACTTC
GAGACCCAGGAGGCTGCCGACAAGGCTATCGAGAAGATGAATGGCATGCTCCTCAATGACCGCAAAAAAGAGCTATTCAG
CCAGTTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNGCCGTGGAGGAGATGAATGGAAAAGAAATCAGTGGGAAAGTCATTTTCGTCGGCCGT
GCACAGAAGAAAGTGGAACGGCAGGCCGAGTTAAAACGAAAATTTGAACAGCTGAAACAGGAGAGAATTAGTCGGTATCA
GGGGGTGAACCTCTACATTAAGAACTTGGATGACACCATTGATGATGAAAAGTTAAGGAAAGAGTTTTCTCCTTTTGGAT
CAATCACCAGTGCTAAGGTGATGCTGGAGGATGGGAGAAGCAAAGGGTTTGGGTTTGTCTGCTTCTCATCCCCTGAAGAG
GCAACCAAAGCAGTCACGGAGATGAACGGACGCATCGTGGGTTCCAAGCCACTGTATGTTGCCCTGGCCCAGAGAAAAGA
AGAGAGAAAGGCTCACCTGACCAACCAGTATATGCAGCGGGTGGCCGGGATGAGAGCGCTCCCCGCCAATGCCATCTTAA
ATCAGTTCCAGCCTGCAGCTGGGGGCTACTTTGTGCCAGCAGTTCCACAGGCTCAGGGAAGACCTCCATATTACACACCT
AACCAGTTAGCACAGATGAGGCCTAATCCACGCTGGCAGCAAGGTGGGAGACCTCAAGGCTTCCAAGGAATGCCAAGTGC
TATACGCCAGTCTGGGCCTCGTCCAGCTCTTCGCCATCTGGCTCCAACTGGTAATGCTCCGGCCTCTCGTGGCCTCCCTA
CTACCGCTCAGAGAGTCGGGTCTGAGTGCCCGGACCGCTTGGCTATGGACTTTGGTGGGGCTGGTGCCGCCCAGCAAGGG
CTGACTGACAGCTGCCAGTCTGGAGGTGTTCCCACAGCTGTGCAGAGCCTAGCGCCTCGTGCTGCTGTTGCCACCGCTGC
TCCTCGGGCTGTTGCACCTTACAAATACGCCTCCAGTGTCCGCAGCCCTCACCCCGCCATCCAGCCCCTGCAGGCACCCC
AGCCTGCGGTCCACGTGCAGGGGCAGGAGCCGCTGACCGCCTCCATGCTGGCCGCAGCACCCCCGCAGGAACAGAAACAG
ATGCTGGGTGAACGTTTGTTCCCGCTCATCCAGACGATGCACTCAAACCTGGCTGGGAAGATCACGGGGATGCTGCTGGA
GATTGACAACTCGGAGCTGCTGCACATGCTGGAGTCCCCCGAGTCTCTCCGCTCCAAGGTGGATGAAGCTGTGGCGGTCC
TACAGGCTCATCATGCCAAGAAAGAAGCTGCCCAGAAGGTGGGCGCTGTTGCTGCTGCTACCTCTTAG
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000011535 | ortholog_one2one | 2 retrogenes | |
| Bos taurus | ENSBTAG00000017125 | ortholog_one2one | 3 retrogenes | |
| Canis familiaris | ENSCAFG00000003081 | ortholog_one2one | 2 retrogenes | |
| Choloepus hoffmanni | ENSCHOG00000005327 | ortholog_one2one | 3 retrogenes | |
| Equus caballus | ENSECAG00000009396 | ortholog_one2one | 2 retrogenes | |
| Felis catus | ENSFCAG00000015254 | ortholog_one2one | 2 retrogenes | |
| Loxodonta africana | ENSLAFG00000000151 | ortholog_one2one | 3 retrogenes | |
| Microcebus murinus | ENSMICG00000016633 | possible_ortholog | 1 retrogene | |
| Myotis lucifugus | ENSMLUG00000012068 | ortholog_one2one | 2 retrogenes | |
| Monodelphis domestica | ENSMODG00000017657 | ortholog_one2many | 2 retrogenes | |
| Mustela putorius furo | ENSMPUG00000014414 | ortholog_one2one | 2 retrogenes | |
| Mus musculus | ENSMUSG00000011257 | ortholog_one2many | 7 retrogenes | |
| Rattus norvegicus | ENSRNOG00000015642 | ortholog_one2many | 2 retrogenes | |
| Sarcophilus harrisii | ENSSHAG00000018139 | ortholog_one2one | 1 retrogene | |
| Sus scrofa | ENSSSCG00000003660 | ortholog_one2one | 3 retrogenes | |
| Tursiops truncatus | ENSTTRG00000002117 | other_paralog | 1 retrogene | |
| Tursiops truncatus | ENSTTRG00000004689 | within_species_paralog | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ttru_246 | 85.78 | 74.59 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_ttru_1117 | 89.63 | 72.79 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSTTRG00000014340 retrocopies