RetrogeneDB ID: | retro_ecab_502 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | 2:96242437..96243544(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PABPC4 | ||
Ensembl ID: | ENSECAG00000009396 | ||
Aliases: | None | ||
Description: | poly(A) binding protein, cytoplasmic 4 (inducible form) [Source:HGNC Symbol;Acc:8557] |
Percent Identity: | 73.78 % |
Parental protein coverage: | 56.06 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD |
MN.AA..Y..ASLYVGDLH.DVTE..L..KFS..GPVLSIR.CRD..TRRSLGYAYVNF.Q.ADA..ALD | |
Retrocopy | MNVAAK-YRQASLYVGDLHADVTEDLLFKKFSTVGPVLSIRICRDLVTRRSLGYAYVNFLQLADAQKALD |
Parental | TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGY |
TMNFD.IKGK.IR.MWSQRD..LRKSG.GNVFIKNLDKSIDNK.LY..FSAFG.ILS.KV..D..GS.GY | |
Retrocopy | TMNFDTIKGKSIRLMWSQRDAYLRKSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQGSRGY |
Parental | AFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKEL |
AFVHF..Q.AAD.AIE.MNG.LL.D...FVGRFK.R..REAEL..KA.EFTN.YIKNFG...DD..L.E. | |
Retrocopy | AFVHFQNQMAADRAIEEMNGALLKDCRLFVGRFKNRQDREAELQNKANEFTNIYIKNFGDDMDDKRLEEV |
Parental | FSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKF |
FS..GKT.SVKVM.D..GKSKGFGFVS...HE.A.KAVEEMNGK.I.G...FVGRAQKK.ERQAELK..F | |
Retrocopy | FSKYGKTVSVKVMTDSTGKSKGFGFVSFYSHEAAQKAVEEMNGKDINGQLLFVGRAQKKAERQAELKQMF |
Parental | EQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAV |
EQ.KQER..R.QGV.LYIKNLDDTIDDEKLR.EFS.FGSI...KVM.E.GRSKGFG..CFSSPEEAT.A. | |
Retrocopy | EQQKQERFRRCQGVKLYIKNLDDTIDDEKLRREFSSFGSISRVKVMKEEGRSKGFGLICFSSPEEATRAM |
Parental | TEMNGRIVGSKPLYVALAQR |
TEMNGRI.GSKPL..ALAQR | |
Retrocopy | TEMNGRILGSKPLNIALAQR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 0 .53 RPM | 87 .72 RPM |
SRP021940_cerebellum | 0 .36 RPM | 38 .79 RPM |
SRP021940_embryo | 8 .03 RPM | 154 .79 RPM |
SRP021940_placental_villous | 1 .88 RPM | 56 .96 RPM |
SRP021940_synovial_membrane | 1 .51 RPM | 102 .07 RPM |
SRP021940_testis | 0 .58 RPM | 77 .63 RPM |
Species | RetrogeneDB ID |
---|---|
Bos taurus | retro_btau_656 |
Oryctolagus cuniculus | retro_ocun_792 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000011535 | 2 retrocopies | |
Bos taurus | ENSBTAG00000017125 | 3 retrocopies | |
Canis familiaris | ENSCAFG00000003081 | 2 retrocopies | |
Choloepus hoffmanni | ENSCHOG00000005327 | 3 retrocopies | |
Equus caballus | ENSECAG00000009396 | 2 retrocopies |
retro_ecab_2, retro_ecab_502 ,
|
Felis catus | ENSFCAG00000015254 | 2 retrocopies | |
Loxodonta africana | ENSLAFG00000000151 | 3 retrocopies | |
Microcebus murinus | ENSMICG00000016633 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000012068 | 2 retrocopies | |
Monodelphis domestica | ENSMODG00000017657 | 2 retrocopies | |
Mustela putorius furo | ENSMPUG00000014414 | 2 retrocopies | |
Mus musculus | ENSMUSG00000011257 | 7 retrocopies | |
Rattus norvegicus | ENSRNOG00000015642 | 2 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000018139 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000003660 | 3 retrocopies | |
Tursiops truncatus | ENSTTRG00000014340 | 2 retrocopies |