RetrogeneDB ID: | retro_btau_28 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | X:42009735..42010884(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSBTAG00000019942 | |
Aliases: | LOC511286, PABPC5 | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PABPC4 | ||
Ensembl ID: | ENSBTAG00000017125 | ||
Aliases: | None | ||
Description: | polyadenylate-binding protein 4 [Source:RefSeq peptide;Acc:NP_001077193] |
Percent Identity: | 67.12 % |
Parental protein coverage: | 56.43 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVI |
Y..A.LYVGDL..DVTE.MLY.KF.PAGP....R.CRD..TR..LGY.YVNF..PADAE.AL.TMNFD.I | |
Retrocopy | YLKAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLI |
Parental | KGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFET |
.GKP.R.MWSQ.D..LRKSG.GN.FIKNLDKSIDN.AL...FSAFG.ILSCKVVCD.NGSKGYA.VHF.. | |
Retrocopy | NGKPFRLMWSQPDDRLRKSGIGNIFIKNLDKSIDNRALFYLFSAFGSILSCKVVCDDNGSKGYAYVHFDS |
Parental | QEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE-FTNVYIKNFGEEVDDENLKELFSQFGK |
..AA..AI..MNG..LN.R.V.VGRFK...ER.AE.....K..FTNV..KNFG...DD..LKELFS..G. | |
Retrocopy | LAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDKATFTNVFVKNFGDDMDDDKLKELFSEYGP |
Parental | TLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEITGKVIFVGRAQKKVERQAELKRKFEQLKQE |
T.SVKV.RD.SGKSKGFGFV.YE.HE.A.KAV....GK.I.GKV..VGRAQKK.ER.AEL.R.FE.L... | |
Retrocopy | TESVKVIRDSSGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLK |
Parental | RISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGR |
..SR..GV..YIKNLD.TIDDEKL..EFS.FGSI..AKVM.E.G..KGFG..CFSS.EEATKAV.EMNGR | |
Retrocopy | EKSRPPGVPIYIKNLDETIDDEKLKEEFSSFGSISRAKVMVEVGQGKGFGVICFSSFEEATKAVDEMNGR |
Parental | IVGSKPLYVALAQRK |
IVGSKPL.V.L.Q.. | |
Retrocopy | IVGSKPLQVTLGQAR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 36 .70 RPM |
ERP005899_muscle | 0 .05 RPM | 90 .74 RPM |
SRP017611_brain | 2 .28 RPM | 36 .27 RPM |
SRP017611_kidney | 0 .36 RPM | 74 .92 RPM |
SRP017611_liver | 0 .00 RPM | 54 .59 RPM |
SRP030211_testis | 0 .62 RPM | 208 .94 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000011535 | 2 retrocopies | |
Bos taurus | ENSBTAG00000017125 | 3 retrocopies |
retro_btau_1492, retro_btau_28 , retro_btau_656,
|
Canis familiaris | ENSCAFG00000003081 | 2 retrocopies | |
Choloepus hoffmanni | ENSCHOG00000005327 | 3 retrocopies | |
Equus caballus | ENSECAG00000009396 | 2 retrocopies | |
Felis catus | ENSFCAG00000015254 | 2 retrocopies | |
Loxodonta africana | ENSLAFG00000000151 | 3 retrocopies | |
Microcebus murinus | ENSMICG00000016633 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000012068 | 2 retrocopies | |
Monodelphis domestica | ENSMODG00000017657 | 2 retrocopies | |
Mustela putorius furo | ENSMPUG00000014414 | 2 retrocopies | |
Mus musculus | ENSMUSG00000011257 | 7 retrocopies | |
Rattus norvegicus | ENSRNOG00000015642 | 2 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000018139 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000003660 | 3 retrocopies | |
Tursiops truncatus | ENSTTRG00000014340 | 2 retrocopies |