Parental gene:

PRDX6, ENSEEUG00000004040

Aliases:None
Description:peroxiredoxin 6 [Source:HGNC Symbol;Acc:16753]
Organism:Hedgehog (Erinaceus europaeus)
Coordinates:scaffold_119446:5064..12914(-)


>ENSEEUG00000004040
ATGCCCGGAGGGCTTCTGCTCGGGGACGAGGCTCCCAACTTTGAGGCTAATACCACGGTGGGCCGCATCCGCTTCCACGA
TTTCCTGGGAAACTCATGGGGCATTCTCTTCTCCCACCCCCGAGACTTCACCCCAGTGTGTACCACTGAGCTTGGCAGAG
CTGCGAAGCTGGCCCCAGAATTTGCCAAGAGGAATGTGAAGCTGATTGCCCTTTCCATCGACAGTGTGGAAGACCATCTT
GCCTGGAGCAAGGATATTAATGCTTATAATGGAGATGAGCCCACAGAGAAGTTACCTTTCCCCATCATTGATGACAAGAA
TCGGGAACTTGCCATCCTGCTGGGCATGCTGGACCCTGCGGAGAAGGATGAGAAGGGCATGCCTGTGACAGCTCGGGTGG
TGTTTATCTTTGGCCCTGACAAGAAGCTGAAGCTGTCGATTCTCTACCCAGCTACCACTGGTAGGAACTTTGATGAGATT
CTCAGAGTAGTTAAATCTCTCCAGCTGACAGCAGAAAAGAGGGTCGCCACACCAGTGGATTGGAAGGATGGAGAAAGTGT
GATGGTCCTTCCAACCATCCCCGAAGACGAAGCCAAAAAACTATTTCCTAAAGGAGTTTTCACCAAAGAGCTCCCATCTG
GCAAGAAATACCTCCGCTACACTCCGCAGCCATAG

Library Parental gene expression (RPM)
SRP017611_liver 723 .01 RPM
SRP017611_kidney 595 .44 RPM
SRP017611_brain 109 .74 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000015560 ortholog_one2one 1 retrogene
retro_amel_493,
Bos taurus ENSBTAG00000004855 ortholog_one2one 2 retrogenes
retro_btau_1325, retro_btau_1477,
Canis familiaris ENSCAFG00000014579 ortholog_one2one 1 retrogene
retro_cfam_492,
Choloepus hoffmanni ENSCHOG00000011367 ortholog_one2one 6 retrogenes
retro_chof_1143, retro_chof_1361, retro_chof_1364, retro_chof_225, retro_chof_2483, retro_chof_2598,
Callithrix jacchus ENSCJAG00000009355 ortholog_one2many 6 retrogenes
retro_cjac_1903, retro_cjac_2188, retro_cjac_3008, retro_cjac_3239, retro_cjac_3830, retro_cjac_4000,
Cavia porcellus ENSCPOG00000011091 ortholog_one2one 1 retrogene
retro_cpor_623,
Equus caballus ENSECAG00000022468 ortholog_one2one 1 retrogene
retro_ecab_215,
Homo sapiens ENSG00000117592 ortholog_one2one 2 retrogenes
retro_hsap_1046, retro_hsap_3017,
Gorilla gorilla ENSGGOG00000026357 ortholog_one2many 1 retrogene
retro_ggor_2086,
Macaca mulatta ENSMMUG00000008776 ortholog_one2one 1 retrogene
retro_mmul_1928,
Monodelphis domestica ENSMODG00000004032 ortholog_one2one 2 retrogenes
retro_mdom_462, retro_mdom_661,
Mustela putorius furo ENSMPUG00000004648 ortholog_one2one 1 retrogene
retro_mputfur_1328,
Mus musculus ENSMUSG00000026701 ortholog_one2many 2 retrogenes
retro_mmus_181, retro_mmus_2334,
Nomascus leucogenys ENSNLEG00000015278 ortholog_one2one 2 retrogenes
retro_nleu_2244, retro_nleu_917,
Pan troglodytes ENSPTRG00000042455 ortholog_one2many 1 retrogene
retro_ptro_70,
Pteropus vampyrus ENSPVAG00000002596 ortholog_one2one 2 retrogenes
retro_pvam_1389, retro_pvam_805,
Rattus norvegicus ENSRNOG00000002896 ortholog_one2one 3 retrogenes
retro_rnor_2084, retro_rnor_754, retro_rnor_806,
Sarcophilus harrisii ENSSHAG00000003248 ortholog_one2one 1 retrogene
retro_shar_478,
Tarsius syrichta ENSTSYG00000010073 ortholog_one2one 2 retrogenes
retro_tsyr_1395, retro_tsyr_193,
Tursiops truncatus ENSTTRG00000008478 ortholog_one2one 1 retrogene
retro_ttru_1274,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_eeur_475 82.07 64.73
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Download FASTA sequences of all ENSEEUG00000004040 retrocopies