RetrogeneDB ID: | retro_ecab_215 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | 10:36267306..36267715(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PRDX6 | ||
Ensembl ID: | ENSECAG00000022468 | ||
Aliases: | None | ||
Description: | peroxiredoxin 6 [Source:HGNC Symbol;Acc:16753] |
Percent Identity: | 67.13 % |
Parental protein coverage: | 62.39 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | KDINAYNGDEPKETLPFPIIDDKNRDLAIL-LGMLDPAEK-DEKGMPVTARVVFIFGPDKKLKLSILYPA |
.DIN.Y.G..P.E.L.FPIID.K..DLAI...GM..P.EK..E.GMPVTA.VVFIFGP.KKLKLSILY.A | |
Retrocopy | QDINVYSGKKPTEMLLFPIIDEKD*DLAIV<VGMMNPVEK<KEQGMPVTACVVFIFGPNKKLKLSILYTA |
Parental | TTGRNFDEILRVVISLQLTAEKRVATPVDWKDGDSVMVLPTIPEEEAKKLFPKGVFTKELPSGKKYLRYT |
.TGR.FDEIL.V.ISLQLTA.K...T.VDWK.GDS..VLP.IP.....KL.PKGV.TKEL.SGKKYL.Y. | |
Retrocopy | ATGRCFDEILGVAISLQLTAKKWFDTLVDWKNGDSMVVLPIIP----SKLSPKGVVTKELLSGKKYLCYP |
Parental | PQP |
P.P | |
Retrocopy | PKP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 0 .00 RPM | 125 .73 RPM |
SRP021940_cerebellum | 0 .00 RPM | 62 .11 RPM |
SRP021940_embryo | 0 .00 RPM | 123 .11 RPM |
SRP021940_placental_villous | 0 .00 RPM | 50 .37 RPM |
SRP021940_synovial_membrane | 0 .00 RPM | 74 .12 RPM |
SRP021940_testis | 0 .00 RPM | 286 .15 RPM |
Species | RetrogeneDB ID |
---|---|
Canis familiaris | retro_cfam_492 |