RetrogeneDB ID: | retro_cjac_1903 | ||
Retrocopylocation | Organism: | Marmoset (Callithrix jacchus) | |
Coordinates: | 2:39040645..39041317(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCJAG00000021897 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PRDX6 | ||
Ensembl ID: | ENSCJAG00000009355 | ||
Aliases: | None | ||
Description: | peroxiredoxin 6 [Source:HGNC Symbol;Acc:16753] |
Percent Identity: | 99.55 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MPGGLLLGDVAPNFEANTTVGPIRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAKRNVKLIA |
MPGGLLLGDVAPNFEANTTVGPIRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAKRNVKL.A | |
Retrocopy | MPGGLLLGDVAPNFEANTTVGPIRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAKRNVKLFA |
Parental | LSIDSVEDHLAWSKDINAYNGEEPTEKLPFPIIDDKNRDLAILLGMLDPAEKDEKGMPVTARVVFVFGPD |
LSIDSVEDHLAWSKDINAYNGEEPTEKLPFPIIDDKNRDLAILLGMLDPAEKDEKGMPVTARVVFVFGPD | |
Retrocopy | LSIDSVEDHLAWSKDINAYNGEEPTEKLPFPIIDDKNRDLAILLGMLDPAEKDEKGMPVTARVVFVFGPD |
Parental | KKLKLSILYPATTGRNFDEILRVVISLQLTAEKRVATPVDWKDGDSVMVLPTIPEEEAKKLFPKGVFTKE |
KKLKLSILYPATTGRNFDEILRVVISLQLTAEKRVATPVDWKDGDSVMVLPTIPEEEAKKLFPKGVFTKE | |
Retrocopy | KKLKLSILYPATTGRNFDEILRVVISLQLTAEKRVATPVDWKDGDSVMVLPTIPEEEAKKLFPKGVFTKE |
Parental | LPSGKKYLRYTPQP |
LPSGKKYLRYTPQP | |
Retrocopy | LPSGKKYLRYTPQP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP051959_colon | 2 .57 RPM | 55 .91 RPM |
SRP051959_heart | 1 .72 RPM | 33 .94 RPM |
SRP051959_kidney | 2 .68 RPM | 52 .16 RPM |
SRP051959_liver | 3 .16 RPM | 77 .55 RPM |
SRP051959_lung | 1 .63 RPM | 32 .83 RPM |
SRP051959_lymph_node | 1 .07 RPM | 21 .73 RPM |
SRP051959_skeletal_muscle | 1 .14 RPM | 21 .44 RPM |
SRP051959_spleen | 1 .49 RPM | 27 .42 RPM |