RetrogeneDB ID: | retro_eeur_475 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_319370:10013..10427(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PRDX6 | ||
Ensembl ID: | ENSEEUG00000004040 | ||
Aliases: | None | ||
Description: | peroxiredoxin 6 [Source:HGNC Symbol;Acc:16753] |
Percent Identity: | 82.07 % |
Parental protein coverage: | 64.73 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MPGGLLLGDEAPNFEANTTVGRIRFHDFLGNSWGILFSHPRDFTPVCTTELGRAAKLAPEFAKRNVKLIA |
MPGG.LL.DEA.NFEANTT.G.I.FHDFLGNSWGILFSHP.DFT.VCTTELGR.AKL.PEFAKRNVKLI. | |
Retrocopy | MPGGFLLRDEASNFEANTTMGCICFHDFLGNSWGILFSHPQDFTLVCTTELGREAKLVPEFAKRNVKLIG |
Parental | LSIDSVEDHLAWSKDINAYNGDEPTEKLPFPIIDDKNRELAILLGMLDPAEKDEKGMPVTARVVFIFGPD |
LSIDSVEDHLAW.KDINAYNG.....KLPF.IIDDKN.ELAIL..MLDPAEK...GMPVTA..VFIFGPD | |
Retrocopy | LSIDSVEDHLAWIKDINAYNGE----KLPFLIIDDKNWELAILQVMLDPAEK---GMPVTAQMVFIFGPD |
Parental | KKLKL |
KKLKL | |
Retrocopy | KKLKL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 109 .74 RPM |
SRP017611_kidney | 0 .00 RPM | 595 .44 RPM |
SRP017611_liver | 0 .00 RPM | 723 .01 RPM |