RetrogeneDB ID: | retro_btau_1325 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 4:84662875..84663548(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSBTAG00000031464 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PRDX6 | ||
Ensembl ID: | ENSBTAG00000004855 | ||
Aliases: | PRDX6, AOP2 | ||
Description: | Peroxiredoxin-6 [Source:UniProtKB/Swiss-Prot;Acc:O77834] |
Percent Identity: | 94.22 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MPGGLLLGDEAPNFEANTTIGRIRFHDYLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAKRNVKMIA |
M.G.LLLGDEAPNFEANT.IGRIRFHDYLGDSWGIL.SHPRDFT.VCTTELGRAAKLAPEFAKRNV.MIA | |
Retrocopy | MLGDLLLGDEAPNFEANTPIGRIRFHDYLGDSWGILSSHPRDFTTVCTTELGRAAKLAPEFAKRNVMMIA |
Parental | LSIDSVEDHLAWSKDINAYNGEEPTEKLPFPIIDDKNRDLAIQLGMLDPAEKDEKGMPVTARVVFIFGPD |
LSIDSVEDHLAWSKDINAYNGE.PTEKLPFPIIDDKNRDLAIQLGMLDPAEKD.K.MP.T.RVVFIFGPD | |
Retrocopy | LSIDSVEDHLAWSKDINAYNGEGPTEKLPFPIIDDKNRDLAIQLGMLDPAEKDKKDMPETSRVVFIFGPD |
Parental | KKLKLSILYPATT-GRNFDEILRVIISLQLTAEKRVATPVDWKNGDSVMVLPTIPEEEAKKLFPKGVFTK |
KKLKLSILYPATT.GRNFDEILRVIISLQLTAEKRVATPVDWKNGDSVMVLPT.PEEEAKKLFPKGVFTK | |
Retrocopy | KKLKLSILYPATT>GRNFDEILRVIISLQLTAEKRVATPVDWKNGDSVMVLPTVPEEEAKKLFPKGVFTK |
Parental | ELPSGKKYLRYTPQP |
ELPSGKKYLRYTPQP | |
Retrocopy | ELPSGKKYLRYTPQP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 204 .75 RPM |
ERP005899_muscle | 0 .21 RPM | 332 .47 RPM |
SRP017611_brain | 0 .05 RPM | 118 .17 RPM |
SRP017611_kidney | 0 .24 RPM | 378 .92 RPM |
SRP017611_liver | 0 .00 RPM | 100 .28 RPM |
SRP030211_testis | 0 .09 RPM | 55 .44 RPM |