RetrogeneDB ID: | retro_tsyr_193 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | GeneScaffold_4986:26087..26663(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PRDX6 | ||
Ensembl ID: | ENSTSYG00000010073 | ||
Aliases: | None | ||
Description: | peroxiredoxin 6 [Source:HGNC Symbol;Acc:16753] |
Percent Identity: | 90.21 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | WGILFSHPRDFTPVCTTELGRAAKLAPEFAKRNVKLIALSIDSVEDHLAWSKDINAYNGNEPTEKLPFPI |
WGILFSHPRDFTPVC.TELGRAAKL.PEFAKRNVKLIALSIDSVEDHLAW.KDINAYNGNE.TEKLPFPI | |
Retrocopy | WGILFSHPRDFTPVCITELGRAAKLVPEFAKRNVKLIALSIDSVEDHLAWNKDINAYNGNESTEKLPFPI |
Parental | IDDKDRDLAILLGMLDPAEKDEKGMPVTARVVFIFGPDKKLKLSILYPATTGRNFDEILRVVISLQLTAE |
IDDKDRDLAILLGMLD.A.KDEKGMPVTARV.FIFGPDKKLKLSILY..TTGRNFDEILRVVISLQLTAE | |
Retrocopy | IDDKDRDLAILLGMLDLAKKDEKGMPVTARVLFIFGPDKKLKLSILYRVTTGRNFDEILRVVISLQLTAE |
Parental | KRVATPVDWKXXXSSNVVVLP-IPEEEAKKLF-KGVFTKELPSGKKYLRYTPQP |
KRVATPVDWK...S..V.VLP.IPEEEAKKLF.KGVFTKELPSGKKYL.YTP.P | |
Retrocopy | KRVATPVDWKDRDS--VMVLPTIPEEEAKKLFPKGVFTKELPSGKKYLCYTP*P |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000015560 | 1 retrocopy | |
Bos taurus | ENSBTAG00000004855 | 2 retrocopies | |
Canis familiaris | ENSCAFG00000014579 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000011367 | 6 retrocopies | |
Callithrix jacchus | ENSCJAG00000009355 | 6 retrocopies | |
Cavia porcellus | ENSCPOG00000011091 | 1 retrocopy | |
Equus caballus | ENSECAG00000022468 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000004040 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000026357 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000004032 | 2 retrocopies | |
Mustela putorius furo | ENSMPUG00000004648 | 1 retrocopy | |
Mus musculus | ENSMUSG00000026701 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000042455 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000002596 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000002896 | 3 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000003248 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000010073 | 2 retrocopies |
retro_tsyr_1395, retro_tsyr_193 ,
|
Tursiops truncatus | ENSTTRG00000008478 | 1 retrocopy |