RetrogeneDB ID: | retro_tsyr_1395 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_424946:117..577(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PRDX6 | ||
Ensembl ID: | ENSTSYG00000010073 | ||
Aliases: | None | ||
Description: | peroxiredoxin 6 [Source:HGNC Symbol;Acc:16753] |
Percent Identity: | 76.92 % |
Parental protein coverage: | 79.69 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | SIDSVEDHLAWSKDINAYNGNEPTEKLPFPIIDDKDRDLAILLGMLDPAEKDEKGMPVTARVVFIFGPDK |
..D.VEDHL.W.KDINAYN.NEPTEKLPFPIIDDKD.DLAILLGMLDPAEKDEKGMPVTA.VVFIFGPDK | |
Retrocopy | NFDIVEDHLVWGKDINAYNVNEPTEKLPFPIIDDKDQDLAILLGMLDPAEKDEKGMPVTAQVVFIFGPDK |
Parental | KLKLSILYPATTGRNFDEILRVVISLQLTAEKRVATPVDWKXXXSSNVVVLP-IPEEEAKKL-FKGVFTK |
.LKLSILYPA.TGRNF.EILR.VISL.LT.EKRVATPVDWK......V.VLP.IPEEE.K....K..... | |
Retrocopy | RLKLSILYPASTGRNFYEILRIVISLHLTVEKRVATPVDWK--DGNSVIVLPTIPEEEVKNFSLKKALYQ |
Parental | ELP-SGKKYLRYTPQP |
..P.S.KKYLRYTPQP | |
Retrocopy | RAP>SDKKYLRYTPQP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000015560 | 1 retrocopy | |
Bos taurus | ENSBTAG00000004855 | 2 retrocopies | |
Canis familiaris | ENSCAFG00000014579 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000011367 | 6 retrocopies | |
Callithrix jacchus | ENSCJAG00000009355 | 6 retrocopies | |
Cavia porcellus | ENSCPOG00000011091 | 1 retrocopy | |
Equus caballus | ENSECAG00000022468 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000004040 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000026357 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000004032 | 2 retrocopies | |
Mustela putorius furo | ENSMPUG00000004648 | 1 retrocopy | |
Mus musculus | ENSMUSG00000026701 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000042455 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000002596 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000002896 | 3 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000003248 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000010073 | 2 retrocopies |
retro_tsyr_1395 , retro_tsyr_193,
|
Tursiops truncatus | ENSTTRG00000008478 | 1 retrocopy |