Parental gene: | RPS23, ENSG00000186468 |
| Aliases: | RPS23, S23 |
| Description: | ribosomal protein S23 [Source:HGNC Symbol;Acc:10410] |
| Organism: | Human (Homo sapiens) |
| Coordinates: | 5:81569176..81574396(-) |
>ENSG00000186468
ATGGGCAAGTGTCGTGGACTTCGTACTGCTAGGAAGCTCCGTAGTCACCGACGAGACCAGAAGTGGCATGATAAACAGTA
TAAGAAAGCTCATTTGGGCACAGCCCTAAAGGCCAACCCTTTTGGAGGTGCTTCTCATGCAAAAGGAATCGTGCTGGAAA
AAGTAGGAGTTGAAGCCAAACAGCCAAATTCTGCCATTAGGAAGTGTGTAAGGGTCCAGCTGATCAAGAATGGCAAGAAA
ATCACAGCCTTTGTACCCAATGACGGTTGCTTGAACTTTATTGAGGAAAATGATGAAGTTCTGGTTGCTGGATTTGGTCG
CAAAGGTCATGCTGTTGGTGATATTCCTGGAGTCCGCTTTAAGGTTGTCAAAGTAGCCAATGTTTCTCTTTTGGCCCTAT
ACAAAGGCAAGAAGGAAAGACCAAGATCATAA
ATGGGCAAGTGTCGTGGACTTCGTACTGCTAGGAAGCTCCGTAGTCACCGACGAGACCAGAAGTGGCATGATAAACAGTA
TAAGAAAGCTCATTTGGGCACAGCCCTAAAGGCCAACCCTTTTGGAGGTGCTTCTCATGCAAAAGGAATCGTGCTGGAAA
AAGTAGGAGTTGAAGCCAAACAGCCAAATTCTGCCATTAGGAAGTGTGTAAGGGTCCAGCTGATCAAGAATGGCAAGAAA
ATCACAGCCTTTGTACCCAATGACGGTTGCTTGAACTTTATTGAGGAAAATGATGAAGTTCTGGTTGCTGGATTTGGTCG
CAAAGGTCATGCTGTTGGTGATATTCCTGGAGTCCGCTTTAAGGTTGTCAAAGTAGCCAATGTTTCTCTTTTGGCCCTAT
ACAAAGGCAAGAAGGAAAGACCAAGATCATAA
| Library | Parental gene expression (RPM) |
|---|---|
| bodymap2_liver | 163 .71 RPM |
| bodymap2_lung | 426 .58 RPM |
| bodymap2_breast | 247 .51 RPM |
| bodymap2_adipose | 396 .60 RPM |
| bodymap2_adrenal | 544 .61 RPM |
| bodymap2_skeletal_muscle | 545 .76 RPM |
| bodymap2_thyroid | 329 .68 RPM |
| bodymap2_prostate | 793 .02 RPM |
| bodymap2_colon | 746 .94 RPM |
| bodymap2_testis | 384 .04 RPM |
| bodymap2_brain | 271 .39 RPM |
| bodymap2_heart | 208 .28 RPM |
| bodymap2_white_blood_cells | 777 .71 RPM |
| bodymap2_lymph_node | 610 .76 RPM |
| bodymap2_ovary | 840 .78 RPM |
| bodymap2_kidney | 274 .29 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Bos taurus | ENSBTAG00000013358 | possible_ortholog | 3 retrogenes | |
| Callithrix jacchus | ENSCJAG00000011247 | possible_ortholog | 2 retrogenes | |
| Gorilla gorilla | ENSGGOG00000025014 | ortholog_one2one | 6 retrogenes | |
| Macaca mulatta | ENSMMUG00000003578 | possible_ortholog | 4 retrogenes | |
| Monodelphis domestica | ENSMODG00000020255 | ortholog_one2one | 3 retrogenes | |
| Mustela putorius furo | ENSMPUG00000008114 | ortholog_one2one | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000013203 | ortholog_one2one | 3 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000010363 | possible_ortholog | 2 retrogenes | |
| Rattus norvegicus | ENSRNOG00000016580 | possible_ortholog | 12 retrogenes | |
| Sarcophilus harrisii | ENSSHAG00000008347 | possible_ortholog | 2 retrogenes | |
| Sus scrofa | ENSSSCG00000014133 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_hsap_1778 | 81.74 | 82.84 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_hsap_2940 | 69.93 | 99.30 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_hsap_3107 | 68.69 | 69.23 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_hsap_3287 | 69.11 | 83.22 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_hsap_3989 | 84.62 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_hsap_4697 | 99.08 | 76.22 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSG00000186468 retrocopies