RetrogeneDB - Parental gene ENSRNOG00000016580 details

                            
>ENSRNOG00000016580
ATGGGTAAGTGTCGTGGTCTCCGTACTGCCCGGAAGCTCCGCAGTCACCGACGGGACCAGAAGTGGCATGATAAACAGTA

CAAGAAAGCCCACTTGGGCACAGCCCTGAAGGCCAATCCGTTTGGGGGTGCCTCTCACGCAAAGGGAATTGTGCTGGAAA

AAGTAGGGGTTGAAGCCAAACAGCCAAATTCTGCCATCCGGAAGTGTGTCAGGGTGCAGCTCATTAAGAACGGCAAGAAG

ATCACAGCGTTCGTGCCCAATGACGGTTGCTTGAACTTCATTGAGGAAAATGATGAAGTTCTGGTTGCTGGATTTGGTCG

CAAAGGCCATGCCGTGGGTGATATTCCTGGAGTCCGCTTTAAGGTGGTTAAAGTAGCCAATGTGTCTCTTTTGGCTCTGT

ACAAAGGCAAGAAGGAAAGACCAAGATCATAA

Library	Parental gene expression (RPM)
SRP017611_brain	86 .92 RPM
SRP017611_kidney	102 .02 RPM
SRP017611_liver	73 .83 RPM

Species	Parental gene accession	Homology type	Retrogenes number
Anolis carolinensis	ENSACAG00000011136	ortholog_one2one	1 retrogene	retro_acar_85,
Ailuropoda melanoleuca	ENSAMEG00000015966	ortholog_one2one	3 retrogenes	retro_amel_1096, retro_amel_341, retro_amel_751,
Bos taurus	ENSBTAG00000013358	possible_ortholog	3 retrogenes	retro_btau_173, retro_btau_205, retro_btau_80,
Callithrix jacchus	ENSCJAG00000011247	possible_ortholog	2 retrogenes	retro_cjac_126, retro_cjac_256,
Cavia porcellus	ENSCPOG00000022705	ortholog_one2one	2 retrogenes	retro_cpor_1182, retro_cpor_1377,
Dipodomys ordii	ENSDORG00000001813	possible_ortholog	2 retrogenes	retro_dord_187, retro_dord_93,
Equus caballus	ENSECAG00000020523	ortholog_one2one	2 retrogenes	retro_ecab_275, retro_ecab_500,
Erinaceus europaeus	ENSEEUG00000001849	ortholog_one2one	7 retrogenes	retro_eeur_102, retro_eeur_262, retro_eeur_326, retro_eeur_462, retro_eeur_515, retro_eeur_53, retro_eeur_662,
Felis catus	ENSFCAG00000008839	ortholog_one2one	7 retrogenes	retro_fcat_1557, retro_fcat_1601, retro_fcat_1876, retro_fcat_2000, retro_fcat_5, retro_fcat_609, retro_fcat_644,
Homo sapiens	ENSG00000186468	possible_ortholog	6 retrogenes	retro_hsap_1778, retro_hsap_2940, retro_hsap_3107, retro_hsap_3287, retro_hsap_3989, retro_hsap_4697,
Gorilla gorilla	ENSGGOG00000025014	possible_ortholog	6 retrogenes	retro_ggor_1316, retro_ggor_2038, retro_ggor_2131, retro_ggor_2237, retro_ggor_2677, retro_ggor_286,
Loxodonta africana	ENSLAFG00000031506	ortholog_one2one	3 retrogenes	retro_lafr_1117, retro_lafr_1216, retro_lafr_606,
Macropus eugenii	ENSMEUG00000012931	possible_ortholog	1 retrogene	retro_meug_811,
Microcebus murinus	ENSMICG00000013964	ortholog_one2one	2 retrogenes	retro_mmur_1354, retro_mmur_872,
Myotis lucifugus	ENSMLUG00000013939	ortholog_one2one	2 retrogenes	retro_mluc_1676, retro_mluc_2183,
Macaca mulatta	ENSMMUG00000003578	possible_ortholog	4 retrogenes	retro_mmul_1239, retro_mmul_1974, retro_mmul_2305, retro_mmul_852,
Monodelphis domestica	ENSMODG00000020255	possible_ortholog	3 retrogenes	retro_mdom_1518, retro_mdom_1612, retro_mdom_395,
Mustela putorius furo	ENSMPUG00000008114	possible_ortholog	1 retrogene	retro_mputfur_1298,
Mus musculus	ENSMUSG00000049517	ortholog_one2one	12 retrogenes	retro_mmus_2151, retro_mmus_2200, retro_mmus_2690, retro_mmus_2812, retro_mmus_3118, retro_mmus_3163, retro_mmus_3168, retro_mmus_323, retro_mmus_3619, retro_mmus_365, retro_mmus_836, retro_mmus_848,
Nomascus leucogenys	ENSNLEG00000013203	possible_ortholog	3 retrogenes	retro_nleu_1353, retro_nleu_1909, retro_nleu_764,
Oryctolagus cuniculus	ENSOCUG00000010363	ortholog_one2one	2 retrogenes	retro_ocun_195, retro_ocun_95,
Otolemur garnettii	ENSOGAG00000008163	ortholog_one2one	11 retrogenes	retro_ogar_1177, retro_ogar_1303, retro_ogar_1785, retro_ogar_1849, retro_ogar_238, retro_ogar_2479, retro_ogar_253, retro_ogar_2695, retro_ogar_2823, retro_ogar_3519, retro_ogar_364,
Pongo abelii	ENSPPYG00000015608	ortholog_one2one	7 retrogenes	retro_pabe_1538, retro_pabe_1585, retro_pabe_19, retro_pabe_2515, retro_pabe_2567, retro_pabe_2716, retro_pabe_3129,
Pan troglodytes	ENSPTRG00000017052	ortholog_one2one	6 retrogenes	retro_ptro_1190, retro_ptro_2056, retro_ptro_2223, retro_ptro_2707, retro_ptro_3075, retro_ptro_3122,
Pteropus vampyrus	ENSPVAG00000002083	possible_ortholog	4 retrogenes	retro_pvam_1483, retro_pvam_782, retro_pvam_80, retro_pvam_922,
Sorex araneus	ENSSARG00000008904	ortholog_one2one	8 retrogenes	retro_sara_194, retro_sara_346, retro_sara_422, retro_sara_481, retro_sara_540, retro_sara_647, retro_sara_648, retro_sara_714,
Sarcophilus harrisii	ENSSHAG00000008347	ortholog_one2many	2 retrogenes	retro_shar_257, retro_shar_348,
Sus scrofa	ENSSSCG00000014133	possible_ortholog	1 retrogene	retro_sscr_92,
Ictidomys tridecemlineatus	ENSSTOG00000000824	ortholog_one2one	3 retrogenes	retro_itri_1418, retro_itri_204, retro_itri_377,
Tarsius syrichta	ENSTSYG00000011385	ortholog_one2one	5 retrogenes	retro_tsyr_1656, retro_tsyr_1946, retro_tsyr_406, retro_tsyr_462, retro_tsyr_933,
Tursiops truncatus	ENSTTRG00000014491	ortholog_one2one	6 retrogenes	retro_ttru_1253, retro_ttru_1555, retro_ttru_186, retro_ttru_458, retro_ttru_487, retro_ttru_578,
Vicugna pacos	ENSVPAG00000009427	possible_ortholog	7 retrogenes	retro_vpac_195, retro_vpac_239, retro_vpac_393, retro_vpac_543, retro_vpac_56, retro_vpac_598, retro_vpac_81,

#	RetrogeneDB ID	Identity (%)	Coverage (%)	ORF conservation	Expression evidence	RDV
1.	retro_rnor_100	95.80	100.00	Please wait, loading	Please wait, loading	Please wait, loading
2.	retro_rnor_149	95.80	100.00	Please wait, loading	Please wait, loading	Please wait, loading
3.	retro_rnor_525	88.89	100.00	Please wait, loading	Please wait, loading	Please wait, loading
4.	retro_rnor_559	84.03	100.00	Please wait, loading	Please wait, loading	Please wait, loading
5.	retro_rnor_1394	83.33	100.00	Please wait, loading	Please wait, loading	Please wait, loading
6.	retro_rnor_1691	89.58	100.00	Please wait, loading	Please wait, loading	Please wait, loading
7.	retro_rnor_1941	95.65	80.42	Please wait, loading	Please wait, loading	Please wait, loading
8.	retro_rnor_1959	71.23	100.00	Please wait, loading	Please wait, loading	Please wait, loading
9.	retro_rnor_1982	84.68	77.62	Please wait, loading	Please wait, loading	Please wait, loading
10.	retro_rnor_2119	71.00	69.23	Please wait, loading	Please wait, loading	Please wait, loading
11.	retro_rnor_2182	88.11	100.00	Please wait, loading	Please wait, loading	Please wait, loading
12.	retro_rnor_2492	79.45	100.00	Please wait, loading	Please wait, loading	Please wait, loading

Download FASTA sequences of all ENSRNOG00000016580 retrocopies

Parental gene:	Rps23, ENSRNOG00000016580
Aliases:	None
Description:	40S ribosomal protein S23 [Source:UniProtKB/Swiss-Prot;Acc:P62268]
Organism:	*Rat (Rattus norvegicus)*
Coordinates:	2:19699471..19701042(+)

Parental gene:

Rps23, ENSRNOG00000016580