Parental gene: | Rps23, ENSRNOG00000016580 |
| Aliases: | None |
| Description: | 40S ribosomal protein S23 [Source:UniProtKB/Swiss-Prot;Acc:P62268] |
| Organism: | Rat (Rattus norvegicus) |
| Coordinates: | 2:19699471..19701042(+) |
>ENSRNOG00000016580
ATGGGTAAGTGTCGTGGTCTCCGTACTGCCCGGAAGCTCCGCAGTCACCGACGGGACCAGAAGTGGCATGATAAACAGTA
CAAGAAAGCCCACTTGGGCACAGCCCTGAAGGCCAATCCGTTTGGGGGTGCCTCTCACGCAAAGGGAATTGTGCTGGAAA
AAGTAGGGGTTGAAGCCAAACAGCCAAATTCTGCCATCCGGAAGTGTGTCAGGGTGCAGCTCATTAAGAACGGCAAGAAG
ATCACAGCGTTCGTGCCCAATGACGGTTGCTTGAACTTCATTGAGGAAAATGATGAAGTTCTGGTTGCTGGATTTGGTCG
CAAAGGCCATGCCGTGGGTGATATTCCTGGAGTCCGCTTTAAGGTGGTTAAAGTAGCCAATGTGTCTCTTTTGGCTCTGT
ACAAAGGCAAGAAGGAAAGACCAAGATCATAA
ATGGGTAAGTGTCGTGGTCTCCGTACTGCCCGGAAGCTCCGCAGTCACCGACGGGACCAGAAGTGGCATGATAAACAGTA
CAAGAAAGCCCACTTGGGCACAGCCCTGAAGGCCAATCCGTTTGGGGGTGCCTCTCACGCAAAGGGAATTGTGCTGGAAA
AAGTAGGGGTTGAAGCCAAACAGCCAAATTCTGCCATCCGGAAGTGTGTCAGGGTGCAGCTCATTAAGAACGGCAAGAAG
ATCACAGCGTTCGTGCCCAATGACGGTTGCTTGAACTTCATTGAGGAAAATGATGAAGTTCTGGTTGCTGGATTTGGTCG
CAAAGGCCATGCCGTGGGTGATATTCCTGGAGTCCGCTTTAAGGTGGTTAAAGTAGCCAATGTGTCTCTTTTGGCTCTGT
ACAAAGGCAAGAAGGAAAGACCAAGATCATAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_liver | 73 .83 RPM |
| SRP017611_kidney | 102 .02 RPM |
| SRP017611_brain | 86 .92 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Anolis carolinensis | ENSACAG00000011136 | ortholog_one2one | 1 retrogene | |
| Ailuropoda melanoleuca | ENSAMEG00000015966 | ortholog_one2one | 3 retrogenes | |
| Bos taurus | ENSBTAG00000013358 | possible_ortholog | 3 retrogenes | |
| Callithrix jacchus | ENSCJAG00000011247 | possible_ortholog | 2 retrogenes | |
| Cavia porcellus | ENSCPOG00000022705 | ortholog_one2one | 2 retrogenes | |
| Dipodomys ordii | ENSDORG00000001813 | possible_ortholog | 2 retrogenes | |
| Equus caballus | ENSECAG00000020523 | ortholog_one2one | 2 retrogenes | |
| Erinaceus europaeus | ENSEEUG00000001849 | ortholog_one2one | 7 retrogenes | |
| Felis catus | ENSFCAG00000008839 | ortholog_one2one | 7 retrogenes | |
| Homo sapiens | ENSG00000186468 | possible_ortholog | 6 retrogenes | |
| Gorilla gorilla | ENSGGOG00000025014 | possible_ortholog | 6 retrogenes | |
| Loxodonta africana | ENSLAFG00000031506 | ortholog_one2one | 3 retrogenes | |
| Macropus eugenii | ENSMEUG00000012931 | possible_ortholog | 1 retrogene | |
| Microcebus murinus | ENSMICG00000013964 | ortholog_one2one | 2 retrogenes | |
| Myotis lucifugus | ENSMLUG00000013939 | ortholog_one2one | 2 retrogenes | |
| Macaca mulatta | ENSMMUG00000003578 | possible_ortholog | 4 retrogenes | |
| Monodelphis domestica | ENSMODG00000020255 | possible_ortholog | 3 retrogenes | |
| Mustela putorius furo | ENSMPUG00000008114 | possible_ortholog | 1 retrogene | |
| Mus musculus | ENSMUSG00000049517 | ortholog_one2one | 12 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000013203 | possible_ortholog | 3 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000010363 | ortholog_one2one | 2 retrogenes | |
| Otolemur garnettii | ENSOGAG00000008163 | ortholog_one2one | 11 retrogenes | |
| Pongo abelii | ENSPPYG00000015608 | ortholog_one2one | 7 retrogenes | |
| Pan troglodytes | ENSPTRG00000017052 | ortholog_one2one | 6 retrogenes | |
| Pteropus vampyrus | ENSPVAG00000002083 | possible_ortholog | 4 retrogenes | |
| Sorex araneus | ENSSARG00000008904 | ortholog_one2one | 8 retrogenes | |
| Sarcophilus harrisii | ENSSHAG00000008347 | ortholog_one2many | 2 retrogenes | |
| Sus scrofa | ENSSSCG00000014133 | possible_ortholog | 1 retrogene | |
| Ictidomys tridecemlineatus | ENSSTOG00000000824 | ortholog_one2one | 3 retrogenes | |
| Tarsius syrichta | ENSTSYG00000011385 | ortholog_one2one | 5 retrogenes | |
| Tursiops truncatus | ENSTTRG00000014491 | ortholog_one2one | 6 retrogenes | |
| Vicugna pacos | ENSVPAG00000009427 | possible_ortholog | 7 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_rnor_100 | 95.80 | 100.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_rnor_149 | 95.80 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_rnor_525 | 88.89 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_rnor_559 | 84.03 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_rnor_1394 | 83.33 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_rnor_1691 | 89.58 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 7. | retro_rnor_1941 | 95.65 | 80.42 | Please wait, loading | Please wait, loading | Please wait, loading |
| 8. | retro_rnor_1959 | 71.23 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 9. | retro_rnor_1982 | 84.68 | 77.62 | Please wait, loading | Please wait, loading | Please wait, loading |
| 10. | retro_rnor_2119 | 71.00 | 69.23 | Please wait, loading | Please wait, loading | Please wait, loading |
| 11. | retro_rnor_2182 | 88.11 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 12. | retro_rnor_2492 | 79.45 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSRNOG00000016580 retrocopies