RetrogeneDB ID: | retro_rnor_525 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 1:211889658..211890086(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rps23 | ||
Ensembl ID: | ENSRNOG00000016580 | ||
Aliases: | None | ||
Description: | 40S ribosomal protein S23 [Source:UniProtKB/Swiss-Prot;Acc:P62268] |
Percent Identity: | 88.89 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MGKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCV |
MGKCRGLRTARKLRSH.RDQK.HDKQYK.AHLGTALKA.P..GASHAKGI.LEKV.VEA.QPNSA.RKCV | |
Retrocopy | MGKCRGLRTARKLRSH*RDQKQHDKQYKRAHLGTALKASPLEGASHAKGIMLEKVEVEAEQPNSATRKCV |
Parental | RVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVS-LLALYKGKKE |
RVQLIK.GKKIT.FVPNDGCLNFIE.NDEVLV.GFGRKGHA.GDIPGVRFKVVKVANVS.LLALYKGKKE | |
Retrocopy | RVQLIKYGKKITVFVPNDGCLNFIESNDEVLVGGFGRKGHAMGDIPGVRFKVVKVANVS<LLALYKGKKE |
Parental | RPRS |
RPRS | |
Retrocopy | RPRS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 86 .92 RPM |
SRP017611_kidney | 0 .00 RPM | 102 .02 RPM |
SRP017611_liver | 0 .00 RPM | 73 .83 RPM |